Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18665 and RS_RS18670 are separated by 52 nucleotides RS_RS18670 and RS_RS18675 are separated by 122 nucleotides RS_RS18675 and RS_RS26055 are separated by 26 nucleotides
RS_RS18665: RS_RS18665 - nitronate monooxygenase, at 414,288 to 415,295
_RS18665
RS_RS18670: RS_RS18670 - nuclear transport factor 2 family protein, at 415,348 to 415,791
_RS18670
RS_RS18675: RS_RS18675 - universal stress protein, at 415,914 to 416,381
_RS18675
RS_RS26055: RS_RS26055 - hypothetical protein, at 416,408 to 416,718
_RS26055
Position (kb) 415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 414.562 kb on + strand, within RS_RS18665 at 414.562 kb on + strand, within RS_RS18665 at 414.562 kb on + strand, within RS_RS18665 at 414.595 kb on + strand, within RS_RS18665 at 414.595 kb on + strand, within RS_RS18665 at 414.595 kb on + strand, within RS_RS18665 at 414.595 kb on + strand, within RS_RS18665 at 414.595 kb on + strand, within RS_RS18665 at 414.596 kb on - strand, within RS_RS18665 at 414.638 kb on - strand, within RS_RS18665 at 414.688 kb on + strand, within RS_RS18665 at 414.689 kb on - strand, within RS_RS18665 at 414.689 kb on - strand, within RS_RS18665 at 414.689 kb on - strand, within RS_RS18665 at 414.928 kb on + strand, within RS_RS18665 at 414.928 kb on + strand, within RS_RS18665 at 414.929 kb on - strand, within RS_RS18665 at 414.929 kb on - strand, within RS_RS18665 at 414.929 kb on - strand, within RS_RS18665 at 414.929 kb on - strand, within RS_RS18665 at 414.994 kb on + strand, within RS_RS18665 at 414.995 kb on - strand, within RS_RS18665 at 414.995 kb on - strand, within RS_RS18665 at 414.995 kb on - strand, within RS_RS18665 at 414.995 kb on - strand, within RS_RS18665 at 415.099 kb on + strand, within RS_RS18665 at 415.640 kb on + strand, within RS_RS18670 at 415.845 kb on + strand at 415.845 kb on + strand at 415.845 kb on + strand at 415.845 kb on + strand at 415.845 kb on + strand at 415.846 kb on - strand at 415.846 kb on - strand at 415.846 kb on - strand at 415.846 kb on - strand at 416.096 kb on + strand, within RS_RS18675 at 416.230 kb on + strand, within RS_RS18675 at 416.230 kb on + strand, within RS_RS18675 at 416.230 kb on + strand, within RS_RS18675 at 416.235 kb on - strand, within RS_RS18675 at 416.235 kb on - strand, within RS_RS18675 at 416.235 kb on - strand, within RS_RS18675 at 416.414 kb on + strand at 416.414 kb on + strand at 416.414 kb on + strand at 416.414 kb on + strand at 416.414 kb on + strand at 416.414 kb on + strand at 416.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 414,562 + RS_RS18665 0.27 +0.8 414,562 + RS_RS18665 0.27 +1.4 414,562 + RS_RS18665 0.27 +0.2 414,595 + RS_RS18665 0.30 +0.8 414,595 + RS_RS18665 0.30 +1.5 414,595 + RS_RS18665 0.30 +1.3 414,595 + RS_RS18665 0.30 -0.8 414,595 + RS_RS18665 0.30 +0.5 414,596 - RS_RS18665 0.31 +0.6 414,638 - RS_RS18665 0.35 +0.7 414,688 + RS_RS18665 0.40 +1.0 414,689 - RS_RS18665 0.40 +0.9 414,689 - RS_RS18665 0.40 -0.8 414,689 - RS_RS18665 0.40 +0.8 414,928 + RS_RS18665 0.63 +1.2 414,928 + RS_RS18665 0.63 +0.9 414,929 - RS_RS18665 0.64 +1.0 414,929 - RS_RS18665 0.64 +1.0 414,929 - RS_RS18665 0.64 +0.8 414,929 - RS_RS18665 0.64 +1.8 414,994 + RS_RS18665 0.70 -1.2 414,995 - RS_RS18665 0.70 +0.8 414,995 - RS_RS18665 0.70 +0.4 414,995 - RS_RS18665 0.70 +0.1 414,995 - RS_RS18665 0.70 -0.3 415,099 + RS_RS18665 0.80 +0.5 415,640 + RS_RS18670 0.66 -0.3 415,845 + +0.3 415,845 + +0.9 415,845 + -0.2 415,845 + -1.8 415,845 + -0.3 415,846 - -0.5 415,846 - -0.3 415,846 - -0.4 415,846 - +0.9 416,096 + RS_RS18675 0.39 +0.4 416,230 + RS_RS18675 0.68 +0.2 416,230 + RS_RS18675 0.68 +0.8 416,230 + RS_RS18675 0.68 -1.2 416,235 - RS_RS18675 0.69 +0.1 416,235 - RS_RS18675 0.69 -0.7 416,235 - RS_RS18675 0.69 -1.1 416,414 + +0.8 416,414 + -0.2 416,414 + +0.5 416,414 + -1.3 416,414 + +0.3 416,414 + +0.9 416,414 + +0.2
Or see this region's nucleotide sequence