Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01150 and RS_RS01155 are separated by 550 nucleotides RS_RS01155 and RS_RS01160 are separated by 173 nucleotides
RS_RS01150: RS_RS01150 - AraC family transcriptional regulator, at 256,430 to 257,176
_RS01150
RS_RS01155: RS_RS01155 - DUF427 domain-containing protein, at 257,727 to 258,083
_RS01155
RS_RS01160: RS_RS01160 - hypothetical protein, at 258,257 to 259,327
_RS01160
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.752 kb on - strand, within RS_RS01150 at 256.752 kb on - strand, within RS_RS01150 at 256.752 kb on - strand, within RS_RS01150 at 257.158 kb on - strand at 257.189 kb on + strand at 257.189 kb on + strand at 257.189 kb on + strand at 257.190 kb on - strand at 257.190 kb on - strand at 257.190 kb on - strand at 257.190 kb on - strand at 257.263 kb on - strand at 257.687 kb on + strand at 257.687 kb on + strand at 257.687 kb on + strand at 257.687 kb on + strand at 257.688 kb on - strand at 257.738 kb on + strand at 257.739 kb on - strand at 257.778 kb on + strand, within RS_RS01155 at 257.779 kb on - strand, within RS_RS01155 at 257.779 kb on - strand, within RS_RS01155 at 257.809 kb on + strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.860 kb on + strand, within RS_RS01155 at 257.944 kb on + strand, within RS_RS01155 at 257.944 kb on + strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.946 kb on - strand, within RS_RS01155 at 258.007 kb on + strand, within RS_RS01155 at 258.144 kb on + strand at 258.144 kb on + strand at 258.144 kb on + strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.259 kb on - strand at 258.339 kb on + strand at 258.340 kb on - strand at 258.340 kb on - strand at 258.494 kb on - strand, within RS_RS01160 at 258.495 kb on + strand, within RS_RS01160 at 258.495 kb on + strand, within RS_RS01160 at 258.496 kb on - strand, within RS_RS01160 at 258.870 kb on + strand, within RS_RS01160 at 258.871 kb on - strand, within RS_RS01160 at 258.871 kb on - strand, within RS_RS01160 at 258.871 kb on - strand, within RS_RS01160 at 258.926 kb on + strand, within RS_RS01160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 256,752 - RS_RS01150 0.43 -0.1 256,752 - RS_RS01150 0.43 -0.8 256,752 - RS_RS01150 0.43 -1.2 257,158 - -0.1 257,189 + -0.8 257,189 + +1.0 257,189 + +0.3 257,190 - -0.5 257,190 - -0.4 257,190 - -2.1 257,190 - +1.1 257,263 - -0.9 257,687 + -0.1 257,687 + -0.0 257,687 + +1.9 257,687 + +1.1 257,688 - +0.5 257,738 + -0.7 257,739 - +1.1 257,778 + RS_RS01155 0.14 -0.3 257,779 - RS_RS01155 0.15 -0.1 257,779 - RS_RS01155 0.15 +0.6 257,809 + RS_RS01155 0.23 +0.5 257,810 - RS_RS01155 0.23 -0.5 257,810 - RS_RS01155 0.23 -0.0 257,810 - RS_RS01155 0.23 +0.1 257,810 - RS_RS01155 0.23 -0.3 257,857 + RS_RS01155 0.36 -0.9 257,857 + RS_RS01155 0.36 -0.3 257,857 + RS_RS01155 0.36 -0.3 257,857 + RS_RS01155 0.36 +0.1 257,858 - RS_RS01155 0.37 -0.0 257,858 - RS_RS01155 0.37 -0.5 257,858 - RS_RS01155 0.37 +0.2 257,858 - RS_RS01155 0.37 +0.3 257,860 + RS_RS01155 0.37 +0.2 257,944 + RS_RS01155 0.61 -0.2 257,944 + RS_RS01155 0.61 +0.3 257,945 - RS_RS01155 0.61 +0.6 257,945 - RS_RS01155 0.61 -0.3 257,945 - RS_RS01155 0.61 +0.5 257,945 - RS_RS01155 0.61 +0.3 257,946 - RS_RS01155 0.61 -0.1 258,007 + RS_RS01155 0.78 +1.1 258,144 + +0.5 258,144 + -0.9 258,144 + -0.0 258,145 - -0.4 258,145 - +0.0 258,145 - -1.3 258,145 - -0.4 258,145 - +0.7 258,145 - -0.4 258,259 - -0.2 258,339 + +1.8 258,340 - +2.3 258,340 - +1.9 258,494 - RS_RS01160 0.22 +1.9 258,495 + RS_RS01160 0.22 +0.8 258,495 + RS_RS01160 0.22 +1.9 258,496 - RS_RS01160 0.22 +2.1 258,870 + RS_RS01160 0.57 +2.0 258,871 - RS_RS01160 0.57 +1.8 258,871 - RS_RS01160 0.57 +2.0 258,871 - RS_RS01160 0.57 +1.8 258,926 + RS_RS01160 0.62 +1.7
Or see this region's nucleotide sequence