Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01125

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS25270 and RS_RS01125 are separated by 326 nucleotidesRS_RS01125 and RS_RS25275 are separated by 29 nucleotidesRS_RS25275 and RS_RS01130 overlap by 4 nucleotides RS_RS25270: RS_RS25270 - hypothetical protein, at 250,073 to 250,351 _RS25270 RS_RS01125: RS_RS01125 - PLP-dependent aminotransferase family protein, at 250,678 to 251,886 _RS01125 RS_RS25275: RS_RS25275 - hypothetical protein, at 251,916 to 252,101 _RS25275 RS_RS01130: RS_RS01130 - membrane protein, at 252,098 to 253,294 _RS01130 Position (kb) 250 251 252Strain fitness (log2 ratio) -1 0 1at 249.874 kb on - strandat 249.874 kb on - strandat 249.953 kb on + strandat 249.978 kb on + strandat 250.032 kb on + strandat 250.032 kb on + strandat 250.032 kb on + strandat 250.033 kb on - strandat 250.033 kb on - strandat 250.114 kb on + strand, within RS_RS25270at 250.115 kb on - strand, within RS_RS25270at 250.119 kb on + strand, within RS_RS25270at 250.166 kb on - strand, within RS_RS25270at 250.166 kb on - strand, within RS_RS25270at 250.240 kb on + strand, within RS_RS25270at 250.240 kb on + strand, within RS_RS25270at 250.240 kb on + strand, within RS_RS25270at 250.241 kb on - strand, within RS_RS25270at 250.241 kb on - strand, within RS_RS25270at 250.470 kb on - strandat 250.596 kb on + strandat 250.597 kb on - strandat 250.627 kb on + strandat 250.627 kb on + strandat 250.628 kb on - strandat 250.628 kb on - strandat 251.089 kb on + strand, within RS_RS01125at 251.090 kb on - strand, within RS_RS01125at 251.185 kb on + strand, within RS_RS01125at 251.185 kb on + strand, within RS_RS01125at 251.186 kb on - strand, within RS_RS01125at 251.186 kb on - strand, within RS_RS01125at 251.299 kb on + strand, within RS_RS01125at 251.300 kb on - strand, within RS_RS01125at 251.311 kb on + strand, within RS_RS01125at 251.312 kb on - strand, within RS_RS01125at 251.312 kb on - strand, within RS_RS01125at 251.312 kb on - strand, within RS_RS01125at 251.387 kb on - strand, within RS_RS01125at 251.585 kb on - strand, within RS_RS01125at 251.767 kb on + strandat 251.767 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.807 kb on - strandat 251.807 kb on - strandat 251.844 kb on - strandat 252.150 kb on + strandat 252.150 kb on + strandat 252.151 kb on - strandat 252.151 kb on - strandat 252.151 kb on - strandat 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.456 kb on + strand, within RS_RS01130at 252.457 kb on - strand, within RS_RS01130at 252.457 kb on - strand, within RS_RS01130at 252.534 kb on + strand, within RS_RS01130at 252.534 kb on + strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.741 kb on + strand, within RS_RS01130at 252.742 kb on - strand, within RS_RS01130

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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249,874 - +0.1
249,874 - +1.1
249,953 + -0.3
249,978 + +0.6
250,032 + -1.0
250,032 + +0.0
250,032 + +0.5
250,033 - -0.8
250,033 - -1.3
250,114 + RS_RS25270 0.15 -0.1
250,115 - RS_RS25270 0.15 +0.8
250,119 + RS_RS25270 0.16 +1.3
250,166 - RS_RS25270 0.33 -0.6
250,166 - RS_RS25270 0.33 +0.0
250,240 + RS_RS25270 0.60 -0.5
250,240 + RS_RS25270 0.60 +0.4
250,240 + RS_RS25270 0.60 -0.4
250,241 - RS_RS25270 0.60 -0.2
250,241 - RS_RS25270 0.60 +0.9
250,470 - +1.1
250,596 + +1.1
250,597 - -0.2
250,627 + -1.4
250,627 + +0.1
250,628 - -0.2
250,628 - +0.5
251,089 + RS_RS01125 0.34 +0.9
251,090 - RS_RS01125 0.34 +1.2
251,185 + RS_RS01125 0.42 -0.3
251,185 + RS_RS01125 0.42 -0.3
251,186 - RS_RS01125 0.42 -0.5
251,186 - RS_RS01125 0.42 +0.1
251,299 + RS_RS01125 0.51 +0.1
251,300 - RS_RS01125 0.51 +0.0
251,311 + RS_RS01125 0.52 +0.8
251,312 - RS_RS01125 0.52 -0.2
251,312 - RS_RS01125 0.52 +0.2
251,312 - RS_RS01125 0.52 +0.1
251,387 - RS_RS01125 0.59 +0.0
251,585 - RS_RS01125 0.75 +1.0
251,767 + +0.1
251,767 + -0.3
251,806 + +0.1
251,806 + +0.5
251,806 + +1.2
251,806 + +1.1
251,806 + +1.1
251,806 + -0.6
251,806 + -0.6
251,807 - -0.0
251,807 - -0.6
251,844 - -0.0
252,150 + -0.5
252,150 + -0.0
252,151 - +0.9
252,151 - -0.5
252,151 - +0.9
252,450 + RS_RS01130 0.29 -0.4
252,450 + RS_RS01130 0.29 +0.4
252,450 + RS_RS01130 0.29 -0.7
252,450 + RS_RS01130 0.29 +1.1
252,450 + RS_RS01130 0.29 -0.1
252,450 + RS_RS01130 0.29 +1.2
252,450 + RS_RS01130 0.29 +0.3
252,450 + RS_RS01130 0.29 +0.9
252,451 - RS_RS01130 0.29 +0.2
252,451 - RS_RS01130 0.29 -0.5
252,451 - RS_RS01130 0.29 +0.3
252,451 - RS_RS01130 0.29 -0.4
252,451 - RS_RS01130 0.29 -0.1
252,451 - RS_RS01130 0.29 +0.1
252,456 + RS_RS01130 0.30 -0.4
252,457 - RS_RS01130 0.30 +0.3
252,457 - RS_RS01130 0.30 -0.6
252,534 + RS_RS01130 0.36 +0.3
252,534 + RS_RS01130 0.36 +0.1
252,535 - RS_RS01130 0.37 +0.0
252,535 - RS_RS01130 0.37 +0.1
252,535 - RS_RS01130 0.37 -0.8
252,741 + RS_RS01130 0.54 +0.2
252,742 - RS_RS01130 0.54 -0.9

Or see this region's nucleotide sequence