Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09590 and PGA1_c09600 are separated by 75 nucleotides PGA1_c09600 and PGA1_c09610 are separated by 19 nucleotides
PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433
_c09590
PGA1_c09600: PGA1_c09600 - cell division protein ftsW, at 984,509 to 985,777
_c09600
PGA1_c09610: PGA1_c09610 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG, at 985,797 to 986,894
_c09610
Position (kb) 984
985
986 Strain fitness (log2 ratio) -2
-1
0
1 at 983.519 kb on + strand, within PGA1_c09590 at 983.538 kb on + strand, within PGA1_c09590 at 983.539 kb on + strand, within PGA1_c09590 at 983.672 kb on + strand, within PGA1_c09590 at 983.687 kb on + strand, within PGA1_c09590 at 983.695 kb on - strand, within PGA1_c09590 at 983.695 kb on - strand, within PGA1_c09590 at 983.741 kb on - strand, within PGA1_c09590 at 983.743 kb on + strand, within PGA1_c09590 at 983.798 kb on - strand, within PGA1_c09590 at 983.798 kb on - strand, within PGA1_c09590 at 983.809 kb on + strand, within PGA1_c09590 at 983.817 kb on - strand, within PGA1_c09590 at 983.817 kb on - strand, within PGA1_c09590 at 983.876 kb on - strand, within PGA1_c09590 at 983.916 kb on - strand, within PGA1_c09590 at 983.936 kb on - strand, within PGA1_c09590 at 983.982 kb on + strand, within PGA1_c09590 at 984.036 kb on - strand, within PGA1_c09590 at 984.050 kb on + strand, within PGA1_c09590 at 984.073 kb on + strand, within PGA1_c09590 at 984.138 kb on + strand, within PGA1_c09590 at 984.381 kb on + strand at 984.386 kb on + strand at 984.394 kb on - strand at 984.394 kb on - strand at 984.394 kb on - strand at 984.412 kb on + strand at 984.413 kb on + strand at 984.413 kb on + strand at 984.420 kb on - strand at 984.421 kb on - strand at 984.477 kb on - strand at 985.701 kb on - strand at 985.701 kb on - strand at 985.729 kb on + strand at 985.739 kb on + strand at 985.739 kb on + strand at 985.739 kb on + strand at 985.739 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 10 mM remove 983,519 + PGA1_c09590 0.23 -1.1 983,538 + PGA1_c09590 0.24 +1.2 983,539 + PGA1_c09590 0.24 -0.0 983,672 + PGA1_c09590 0.36 -0.4 983,687 + PGA1_c09590 0.37 +0.5 983,695 - PGA1_c09590 0.37 +1.7 983,695 - PGA1_c09590 0.37 +1.2 983,741 - PGA1_c09590 0.41 -0.8 983,743 + PGA1_c09590 0.42 +0.6 983,798 - PGA1_c09590 0.46 +0.9 983,798 - PGA1_c09590 0.46 +0.8 983,809 + PGA1_c09590 0.47 +0.6 983,817 - PGA1_c09590 0.48 -0.9 983,817 - PGA1_c09590 0.48 +0.5 983,876 - PGA1_c09590 0.53 +0.2 983,916 - PGA1_c09590 0.56 +0.9 983,936 - PGA1_c09590 0.58 -1.4 983,982 + PGA1_c09590 0.62 -0.3 984,036 - PGA1_c09590 0.66 -0.4 984,050 + PGA1_c09590 0.68 -0.6 984,073 + PGA1_c09590 0.69 -0.4 984,138 + PGA1_c09590 0.75 +0.8 984,381 + +0.2 984,386 + +0.0 984,394 - -0.9 984,394 - +0.7 984,394 - +0.2 984,412 + -0.5 984,413 + -0.1 984,413 + +0.9 984,420 - +0.1 984,421 - +0.3 984,477 - +0.2 985,701 - +0.2 985,701 - -0.5 985,729 + +0.6 985,739 + -2.1 985,739 + -1.0 985,739 + +0.1 985,739 + +0.3
Or see this region's nucleotide sequence