Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00650

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00640 and PGA1_c00650 are separated by 109 nucleotidesPGA1_c00650 and PGA1_c00660 are separated by 106 nucleotidesPGA1_c00660 and PGA1_c00670 overlap by 4 nucleotides PGA1_c00640: PGA1_c00640 - putative elongation factor G, at 64,008 to 66,002 _c00640 PGA1_c00650: PGA1_c00650 - Uncharacterized conserved protein, at 66,112 to 66,639 _c00650 PGA1_c00660: PGA1_c00660 - transcriptional regulator, lysR family, at 66,746 to 67,624 _c00660 PGA1_c00670: PGA1_c00670 - putative integral membrane protein, at 67,621 to 68,529 _c00670 Position (kb) 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 65.125 kb on + strand, within PGA1_c00640at 65.127 kb on + strand, within PGA1_c00640at 65.159 kb on + strand, within PGA1_c00640at 65.159 kb on + strand, within PGA1_c00640at 65.167 kb on - strand, within PGA1_c00640at 65.174 kb on - strand, within PGA1_c00640at 65.176 kb on + strand, within PGA1_c00640at 65.250 kb on + strand, within PGA1_c00640at 65.258 kb on - strand, within PGA1_c00640at 65.335 kb on + strand, within PGA1_c00640at 65.335 kb on + strand, within PGA1_c00640at 65.367 kb on + strand, within PGA1_c00640at 65.454 kb on + strand, within PGA1_c00640at 65.462 kb on - strand, within PGA1_c00640at 65.462 kb on - strand, within PGA1_c00640at 65.462 kb on - strand, within PGA1_c00640at 65.507 kb on + strand, within PGA1_c00640at 65.507 kb on + strand, within PGA1_c00640at 65.508 kb on + strand, within PGA1_c00640at 65.515 kb on + strand, within PGA1_c00640at 65.515 kb on - strand, within PGA1_c00640at 65.515 kb on - strand, within PGA1_c00640at 65.515 kb on - strand, within PGA1_c00640at 65.515 kb on - strand, within PGA1_c00640at 65.515 kb on - strand, within PGA1_c00640at 65.515 kb on - strand, within PGA1_c00640at 65.516 kb on - strand, within PGA1_c00640at 65.520 kb on + strand, within PGA1_c00640at 65.523 kb on + strand, within PGA1_c00640at 65.533 kb on - strand, within PGA1_c00640at 65.533 kb on - strand, within PGA1_c00640at 65.533 kb on - strand, within PGA1_c00640at 65.580 kb on + strand, within PGA1_c00640at 65.615 kb on - strand, within PGA1_c00640at 65.617 kb on + strand, within PGA1_c00640at 65.617 kb on + strand, within PGA1_c00640at 65.617 kb on + strand, within PGA1_c00640at 65.617 kb on + strand, within PGA1_c00640at 65.617 kb on + strand, within PGA1_c00640at 65.617 kb on + strand, within PGA1_c00640at 65.633 kb on + strand, within PGA1_c00640at 65.641 kb on - strand, within PGA1_c00640at 65.680 kb on + strand, within PGA1_c00640at 65.716 kb on - strand, within PGA1_c00640at 65.763 kb on + strand, within PGA1_c00640at 65.778 kb on - strand, within PGA1_c00640at 65.799 kb on + strand, within PGA1_c00640at 65.826 kb on + strandat 65.831 kb on + strandat 65.831 kb on + strandat 65.839 kb on - strandat 65.839 kb on - strandat 65.839 kb on - strandat 65.845 kb on + strandat 65.845 kb on + strandat 65.845 kb on + strandat 65.901 kb on + strandat 65.910 kb on + strandat 65.918 kb on + strandat 65.919 kb on - strandat 66.007 kb on + strandat 66.052 kb on + strandat 66.103 kb on - strandat 66.113 kb on - strandat 66.127 kb on - strandat 66.127 kb on - strandat 66.146 kb on - strandat 66.201 kb on + strand, within PGA1_c00650at 66.202 kb on - strand, within PGA1_c00650at 66.209 kb on + strand, within PGA1_c00650at 66.220 kb on - strand, within PGA1_c00650at 66.227 kb on + strand, within PGA1_c00650at 66.235 kb on - strand, within PGA1_c00650at 66.296 kb on + strand, within PGA1_c00650at 66.296 kb on + strand, within PGA1_c00650at 66.336 kb on - strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.391 kb on - strand, within PGA1_c00650at 66.427 kb on + strand, within PGA1_c00650at 66.442 kb on - strand, within PGA1_c00650at 66.474 kb on + strand, within PGA1_c00650at 66.518 kb on - strand, within PGA1_c00650at 66.518 kb on - strand, within PGA1_c00650at 66.523 kb on - strand, within PGA1_c00650at 66.540 kb on - strand, within PGA1_c00650at 66.569 kb on + strand, within PGA1_c00650at 66.569 kb on + strand, within PGA1_c00650at 66.574 kb on + strand, within PGA1_c00650at 66.577 kb on - strand, within PGA1_c00650at 66.582 kb on - strand, within PGA1_c00650at 66.641 kb on - strandat 66.641 kb on - strandat 66.641 kb on - strandat 66.641 kb on - strandat 66.705 kb on + strandat 66.730 kb on - strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.745 kb on - strandat 66.771 kb on - strandat 66.850 kb on - strand, within PGA1_c00660at 66.871 kb on - strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.991 kb on + strand, within PGA1_c00660at 66.998 kb on + strand, within PGA1_c00660at 66.999 kb on + strand, within PGA1_c00660at 67.102 kb on - strand, within PGA1_c00660at 67.208 kb on + strand, within PGA1_c00660at 67.238 kb on + strand, within PGA1_c00660at 67.267 kb on + strand, within PGA1_c00660at 67.284 kb on - strand, within PGA1_c00660at 67.291 kb on - strand, within PGA1_c00660at 67.329 kb on - strand, within PGA1_c00660at 67.421 kb on - strand, within PGA1_c00660at 67.429 kb on + strand, within PGA1_c00660at 67.429 kb on + strand, within PGA1_c00660at 67.437 kb on - strand, within PGA1_c00660at 67.459 kb on - strand, within PGA1_c00660at 67.487 kb on - strand, within PGA1_c00660at 67.498 kb on - strand, within PGA1_c00660at 67.531 kb on - strand, within PGA1_c00660at 67.550 kb on + strandat 67.550 kb on + strandat 67.558 kb on - strandat 67.571 kb on - strandat 67.595 kb on - strandat 67.609 kb on + strandat 67.609 kb on + strandat 67.617 kb on - strandat 67.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 10 mM
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65,125 + PGA1_c00640 0.56 +0.7
65,127 + PGA1_c00640 0.56 -0.3
65,159 + PGA1_c00640 0.58 -2.1
65,159 + PGA1_c00640 0.58 -1.0
65,167 - PGA1_c00640 0.58 +0.1
65,174 - PGA1_c00640 0.58 +3.3
65,176 + PGA1_c00640 0.59 -0.4
65,250 + PGA1_c00640 0.62 +0.2
65,258 - PGA1_c00640 0.63 -1.4
65,335 + PGA1_c00640 0.67 -0.4
65,335 + PGA1_c00640 0.67 -0.6
65,367 + PGA1_c00640 0.68 -0.4
65,454 + PGA1_c00640 0.72 -0.1
65,462 - PGA1_c00640 0.73 -0.3
65,462 - PGA1_c00640 0.73 -0.6
65,462 - PGA1_c00640 0.73 +0.1
65,507 + PGA1_c00640 0.75 -0.4
65,507 + PGA1_c00640 0.75 -0.1
65,508 + PGA1_c00640 0.75 +0.6
65,515 + PGA1_c00640 0.76 +3.3
65,515 - PGA1_c00640 0.76 -2.6
65,515 - PGA1_c00640 0.76 -0.5
65,515 - PGA1_c00640 0.76 -2.2
65,515 - PGA1_c00640 0.76 -0.0
65,515 - PGA1_c00640 0.76 -0.1
65,515 - PGA1_c00640 0.76 +0.6
65,516 - PGA1_c00640 0.76 +1.0
65,520 + PGA1_c00640 0.76 +0.9
65,523 + PGA1_c00640 0.76 -0.1
65,533 - PGA1_c00640 0.76 +0.6
65,533 - PGA1_c00640 0.76 +1.1
65,533 - PGA1_c00640 0.76 -0.7
65,580 + PGA1_c00640 0.79 -1.6
65,615 - PGA1_c00640 0.81 +1.2
65,617 + PGA1_c00640 0.81 +0.6
65,617 + PGA1_c00640 0.81 +0.4
65,617 + PGA1_c00640 0.81 -0.2
65,617 + PGA1_c00640 0.81 +0.6
65,617 + PGA1_c00640 0.81 +0.4
65,617 + PGA1_c00640 0.81 +0.1
65,633 + PGA1_c00640 0.81 +0.8
65,641 - PGA1_c00640 0.82 -0.5
65,680 + PGA1_c00640 0.84 +1.1
65,716 - PGA1_c00640 0.86 -0.1
65,763 + PGA1_c00640 0.88 -0.3
65,778 - PGA1_c00640 0.89 -0.4
65,799 + PGA1_c00640 0.90 -0.7
65,826 + -0.2
65,831 + +0.8
65,831 + -0.5
65,839 - +0.1
65,839 - +0.1
65,839 - -1.2
65,845 + -0.2
65,845 + -0.2
65,845 + +1.1
65,901 + -0.7
65,910 + -0.8
65,918 + -2.0
65,919 - +0.6
66,007 + -1.1
66,052 + -0.6
66,103 - +0.0
66,113 - +0.2
66,127 - +0.7
66,127 - +1.3
66,146 - +0.1
66,201 + PGA1_c00650 0.17 -1.0
66,202 - PGA1_c00650 0.17 +0.2
66,209 + PGA1_c00650 0.18 +0.2
66,220 - PGA1_c00650 0.20 +0.1
66,227 + PGA1_c00650 0.22 +0.3
66,235 - PGA1_c00650 0.23 -0.2
66,296 + PGA1_c00650 0.35 +1.2
66,296 + PGA1_c00650 0.35 +0.0
66,336 - PGA1_c00650 0.42 +1.7
66,338 + PGA1_c00650 0.43 +0.2
66,338 + PGA1_c00650 0.43 +2.6
66,338 + PGA1_c00650 0.43 -0.4
66,338 + PGA1_c00650 0.43 +0.8
66,338 + PGA1_c00650 0.43 -1.3
66,338 + PGA1_c00650 0.43 +0.4
66,338 + PGA1_c00650 0.43 +0.4
66,338 + PGA1_c00650 0.43 +0.3
66,338 + PGA1_c00650 0.43 +0.2
66,338 + PGA1_c00650 0.43 -1.1
66,338 + PGA1_c00650 0.43 -0.3
66,338 + PGA1_c00650 0.43 +1.0
66,338 + PGA1_c00650 0.43 +1.0
66,338 + PGA1_c00650 0.43 +0.4
66,338 + PGA1_c00650 0.43 +1.2
66,338 + PGA1_c00650 0.43 -2.8
66,346 - PGA1_c00650 0.44 -0.1
66,346 - PGA1_c00650 0.44 -0.7
66,346 - PGA1_c00650 0.44 +0.4
66,346 - PGA1_c00650 0.44 +1.1
66,346 - PGA1_c00650 0.44 +0.2
66,346 - PGA1_c00650 0.44 -0.9
66,391 - PGA1_c00650 0.53 +1.6
66,427 + PGA1_c00650 0.60 +0.4
66,442 - PGA1_c00650 0.62 +0.6
66,474 + PGA1_c00650 0.69 +0.5
66,518 - PGA1_c00650 0.77 -0.1
66,518 - PGA1_c00650 0.77 +1.6
66,523 - PGA1_c00650 0.78 +0.4
66,540 - PGA1_c00650 0.81 +0.2
66,569 + PGA1_c00650 0.87 -1.6
66,569 + PGA1_c00650 0.87 -2.1
66,574 + PGA1_c00650 0.88 +0.3
66,577 - PGA1_c00650 0.88 +0.3
66,582 - PGA1_c00650 0.89 +0.2
66,641 - -0.3
66,641 - +1.0
66,641 - +1.4
66,641 - -0.2
66,705 + +0.5
66,730 - -1.3
66,732 + -0.4
66,732 + -0.3
66,732 + -1.3
66,732 + -0.3
66,732 + +0.4
66,732 + -0.8
66,732 + +0.1
66,740 - -1.1
66,740 - -0.0
66,740 - -0.4
66,740 - -0.6
66,740 - +0.5
66,740 - +0.4
66,740 - +0.4
66,740 - +1.1
66,740 - +1.6
66,740 - -0.4
66,745 - -0.7
66,771 - -0.6
66,850 - PGA1_c00660 0.12 -0.3
66,871 - PGA1_c00660 0.14 +1.0
66,955 + PGA1_c00660 0.24 -1.2
66,955 + PGA1_c00660 0.24 -0.4
66,955 + PGA1_c00660 0.24 +0.4
66,955 + PGA1_c00660 0.24 -0.3
66,963 - PGA1_c00660 0.25 -0.1
66,963 - PGA1_c00660 0.25 +0.1
66,963 - PGA1_c00660 0.25 +0.3
66,963 - PGA1_c00660 0.25 -0.4
66,991 + PGA1_c00660 0.28 -0.1
66,998 + PGA1_c00660 0.29 +1.5
66,999 + PGA1_c00660 0.29 +0.2
67,102 - PGA1_c00660 0.41 +0.1
67,208 + PGA1_c00660 0.53 -0.6
67,238 + PGA1_c00660 0.56 -0.7
67,267 + PGA1_c00660 0.59 +0.4
67,284 - PGA1_c00660 0.61 +2.4
67,291 - PGA1_c00660 0.62 +1.2
67,329 - PGA1_c00660 0.66 -1.2
67,421 - PGA1_c00660 0.77 +0.9
67,429 + PGA1_c00660 0.78 -1.3
67,429 + PGA1_c00660 0.78 -0.3
67,437 - PGA1_c00660 0.79 +1.2
67,459 - PGA1_c00660 0.81 +0.9
67,487 - PGA1_c00660 0.84 -0.7
67,498 - PGA1_c00660 0.86 +0.7
67,531 - PGA1_c00660 0.89 +0.6
67,550 + -0.2
67,550 + -0.5
67,558 - +0.4
67,571 - +2.0
67,595 - +1.2
67,609 + -1.0
67,609 + -0.5
67,617 - +1.7
67,617 - -0.8

Or see this region's nucleotide sequence