Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00420

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00410 and PGA1_c00420 are separated by 67 nucleotidesPGA1_c00420 and PGA1_c00430 are separated by 11 nucleotides PGA1_c00410: PGA1_c00410 - 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase MhpA, at 44,780 to 46,486 _c00410 PGA1_c00420: PGA1_c00420 - metallo-beta-lactamase-like protein, at 46,554 to 47,504 _c00420 PGA1_c00430: PGA1_c00430 - fumarylacetoacetase Fah, at 47,516 to 48,772 _c00430 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.566 kb on - strand, within PGA1_c00410at 45.582 kb on - strand, within PGA1_c00410at 45.588 kb on - strand, within PGA1_c00410at 45.645 kb on - strand, within PGA1_c00410at 45.650 kb on + strand, within PGA1_c00410at 45.660 kb on + strand, within PGA1_c00410at 45.668 kb on - strand, within PGA1_c00410at 45.668 kb on - strand, within PGA1_c00410at 45.668 kb on - strand, within PGA1_c00410at 45.682 kb on - strand, within PGA1_c00410at 45.709 kb on + strand, within PGA1_c00410at 45.730 kb on + strand, within PGA1_c00410at 45.773 kb on - strand, within PGA1_c00410at 45.793 kb on - strand, within PGA1_c00410at 45.828 kb on - strand, within PGA1_c00410at 45.828 kb on - strand, within PGA1_c00410at 45.878 kb on + strand, within PGA1_c00410at 45.878 kb on + strand, within PGA1_c00410at 45.878 kb on + strand, within PGA1_c00410at 45.880 kb on + strand, within PGA1_c00410at 45.886 kb on - strand, within PGA1_c00410at 45.886 kb on - strand, within PGA1_c00410at 45.896 kb on + strand, within PGA1_c00410at 45.906 kb on + strand, within PGA1_c00410at 45.909 kb on - strand, within PGA1_c00410at 45.916 kb on + strand, within PGA1_c00410at 45.919 kb on - strand, within PGA1_c00410at 45.924 kb on - strand, within PGA1_c00410at 45.938 kb on - strand, within PGA1_c00410at 45.938 kb on - strand, within PGA1_c00410at 45.947 kb on - strand, within PGA1_c00410at 45.984 kb on + strand, within PGA1_c00410at 45.993 kb on + strand, within PGA1_c00410at 46.022 kb on - strand, within PGA1_c00410at 46.046 kb on - strand, within PGA1_c00410at 46.048 kb on + strand, within PGA1_c00410at 46.072 kb on + strand, within PGA1_c00410at 46.086 kb on + strand, within PGA1_c00410at 46.086 kb on + strand, within PGA1_c00410at 46.086 kb on + strand, within PGA1_c00410at 46.094 kb on - strand, within PGA1_c00410at 46.132 kb on - strand, within PGA1_c00410at 46.147 kb on + strand, within PGA1_c00410at 46.158 kb on - strand, within PGA1_c00410at 46.174 kb on + strand, within PGA1_c00410at 46.210 kb on + strand, within PGA1_c00410at 46.256 kb on - strand, within PGA1_c00410at 46.270 kb on + strand, within PGA1_c00410at 46.288 kb on + strand, within PGA1_c00410at 46.296 kb on - strand, within PGA1_c00410at 46.338 kb on + strandat 46.346 kb on - strandat 46.346 kb on - strandat 46.346 kb on - strandat 46.363 kb on + strandat 46.376 kb on - strandat 46.429 kb on + strandat 46.432 kb on - strandat 46.432 kb on - strandat 46.437 kb on - strandat 46.437 kb on - strandat 46.437 kb on - strandat 46.437 kb on - strandat 46.459 kb on - strandat 46.518 kb on + strandat 46.531 kb on - strandat 46.531 kb on - strandat 46.557 kb on + strandat 46.565 kb on - strandat 46.565 kb on - strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.602 kb on + strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.629 kb on - strandat 46.631 kb on + strandat 46.646 kb on + strandat 46.664 kb on - strand, within PGA1_c00420at 46.692 kb on + strand, within PGA1_c00420at 46.700 kb on - strand, within PGA1_c00420at 46.702 kb on + strand, within PGA1_c00420at 46.715 kb on + strand, within PGA1_c00420at 46.728 kb on - strand, within PGA1_c00420at 46.769 kb on + strand, within PGA1_c00420at 46.808 kb on - strand, within PGA1_c00420at 46.909 kb on - strand, within PGA1_c00420at 46.998 kb on - strand, within PGA1_c00420at 47.012 kb on + strand, within PGA1_c00420at 47.025 kb on + strand, within PGA1_c00420at 47.025 kb on + strand, within PGA1_c00420at 47.033 kb on - strand, within PGA1_c00420at 47.068 kb on - strand, within PGA1_c00420at 47.100 kb on + strand, within PGA1_c00420at 47.126 kb on - strand, within PGA1_c00420at 47.126 kb on - strand, within PGA1_c00420at 47.160 kb on + strand, within PGA1_c00420at 47.168 kb on - strand, within PGA1_c00420at 47.268 kb on - strand, within PGA1_c00420at 47.279 kb on - strand, within PGA1_c00420at 47.289 kb on - strand, within PGA1_c00420at 47.349 kb on + strand, within PGA1_c00420at 47.350 kb on + strand, within PGA1_c00420at 47.350 kb on + strand, within PGA1_c00420at 47.358 kb on - strand, within PGA1_c00420at 47.425 kb on + strandat 47.428 kb on + strandat 47.447 kb on + strandat 47.447 kb on + strandat 47.472 kb on + strandat 47.502 kb on - strandat 47.531 kb on - strandat 47.533 kb on + strandat 47.533 kb on + strandat 47.533 kb on + strandat 47.541 kb on - strandat 47.541 kb on - strandat 47.541 kb on - strandat 47.543 kb on + strandat 47.548 kb on + strandat 47.551 kb on - strandat 47.551 kb on - strandat 47.551 kb on - strandat 47.556 kb on - strandat 47.587 kb on - strandat 47.593 kb on - strandat 47.604 kb on + strandat 47.655 kb on - strand, within PGA1_c00430at 47.682 kb on + strand, within PGA1_c00430at 47.703 kb on + strand, within PGA1_c00430at 47.712 kb on - strand, within PGA1_c00430at 47.714 kb on + strand, within PGA1_c00430at 47.774 kb on + strand, within PGA1_c00430at 47.862 kb on - strand, within PGA1_c00430at 47.869 kb on + strand, within PGA1_c00430at 47.887 kb on + strand, within PGA1_c00430at 47.925 kb on - strand, within PGA1_c00430at 48.002 kb on - strand, within PGA1_c00430at 48.059 kb on + strand, within PGA1_c00430at 48.067 kb on - strand, within PGA1_c00430at 48.067 kb on - strand, within PGA1_c00430at 48.067 kb on - strand, within PGA1_c00430at 48.161 kb on - strand, within PGA1_c00430at 48.249 kb on - strand, within PGA1_c00430at 48.285 kb on - strand, within PGA1_c00430at 48.287 kb on + strand, within PGA1_c00430at 48.356 kb on - strand, within PGA1_c00430at 48.367 kb on + strand, within PGA1_c00430at 48.380 kb on + strand, within PGA1_c00430at 48.390 kb on + strand, within PGA1_c00430at 48.405 kb on - strand, within PGA1_c00430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 10 mM
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45,566 - PGA1_c00410 0.46 -0.5
45,582 - PGA1_c00410 0.47 -0.5
45,588 - PGA1_c00410 0.47 +0.1
45,645 - PGA1_c00410 0.51 +0.3
45,650 + PGA1_c00410 0.51 -1.6
45,660 + PGA1_c00410 0.52 +0.9
45,668 - PGA1_c00410 0.52 -0.8
45,668 - PGA1_c00410 0.52 +0.4
45,668 - PGA1_c00410 0.52 -0.1
45,682 - PGA1_c00410 0.53 -0.0
45,709 + PGA1_c00410 0.54 +0.1
45,730 + PGA1_c00410 0.56 +0.2
45,773 - PGA1_c00410 0.58 -0.6
45,793 - PGA1_c00410 0.59 -0.5
45,828 - PGA1_c00410 0.61 -0.4
45,828 - PGA1_c00410 0.61 +0.2
45,878 + PGA1_c00410 0.64 +0.9
45,878 + PGA1_c00410 0.64 +0.5
45,878 + PGA1_c00410 0.64 -2.1
45,880 + PGA1_c00410 0.64 +0.9
45,886 - PGA1_c00410 0.65 -0.6
45,886 - PGA1_c00410 0.65 -0.0
45,896 + PGA1_c00410 0.65 +0.1
45,906 + PGA1_c00410 0.66 -0.5
45,909 - PGA1_c00410 0.66 -1.3
45,916 + PGA1_c00410 0.67 -0.9
45,919 - PGA1_c00410 0.67 -0.6
45,924 - PGA1_c00410 0.67 +0.0
45,938 - PGA1_c00410 0.68 +1.6
45,938 - PGA1_c00410 0.68 +0.6
45,947 - PGA1_c00410 0.68 -1.0
45,984 + PGA1_c00410 0.71 -0.4
45,993 + PGA1_c00410 0.71 -2.4
46,022 - PGA1_c00410 0.73 +0.4
46,046 - PGA1_c00410 0.74 -0.6
46,048 + PGA1_c00410 0.74 +0.4
46,072 + PGA1_c00410 0.76 +0.4
46,086 + PGA1_c00410 0.77 +0.1
46,086 + PGA1_c00410 0.77 -1.1
46,086 + PGA1_c00410 0.77 -2.4
46,094 - PGA1_c00410 0.77 +2.3
46,132 - PGA1_c00410 0.79 +1.1
46,147 + PGA1_c00410 0.80 +0.1
46,158 - PGA1_c00410 0.81 +0.6
46,174 + PGA1_c00410 0.82 +0.7
46,210 + PGA1_c00410 0.84 -0.5
46,256 - PGA1_c00410 0.86 +0.3
46,270 + PGA1_c00410 0.87 -0.2
46,288 + PGA1_c00410 0.88 +0.1
46,296 - PGA1_c00410 0.89 +1.1
46,338 + -0.0
46,346 - +0.6
46,346 - -0.5
46,346 - -0.6
46,363 + +0.0
46,376 - -0.4
46,429 + -0.5
46,432 - +0.1
46,432 - -0.3
46,437 - +0.2
46,437 - +0.2
46,437 - -2.1
46,437 - -0.6
46,459 - +0.3
46,518 + -2.6
46,531 - -0.4
46,531 - -1.3
46,557 + +0.1
46,565 - +0.6
46,565 - -0.6
46,597 + +1.7
46,597 + +0.3
46,597 + +0.2
46,597 + -0.4
46,597 + +0.5
46,602 + +1.2
46,605 - +0.5
46,605 - +0.6
46,605 - +0.0
46,605 - -1.3
46,605 - -1.0
46,629 - -0.7
46,631 + +1.0
46,646 + +1.4
46,664 - PGA1_c00420 0.12 +0.9
46,692 + PGA1_c00420 0.15 +0.3
46,700 - PGA1_c00420 0.15 +0.1
46,702 + PGA1_c00420 0.16 +1.3
46,715 + PGA1_c00420 0.17 -0.6
46,728 - PGA1_c00420 0.18 +0.7
46,769 + PGA1_c00420 0.23 -0.9
46,808 - PGA1_c00420 0.27 +0.8
46,909 - PGA1_c00420 0.37 +0.4
46,998 - PGA1_c00420 0.47 -0.6
47,012 + PGA1_c00420 0.48 +0.4
47,025 + PGA1_c00420 0.50 -1.4
47,025 + PGA1_c00420 0.50 -1.8
47,033 - PGA1_c00420 0.50 -1.1
47,068 - PGA1_c00420 0.54 -1.4
47,100 + PGA1_c00420 0.57 -1.1
47,126 - PGA1_c00420 0.60 -0.7
47,126 - PGA1_c00420 0.60 -1.6
47,160 + PGA1_c00420 0.64 -0.1
47,168 - PGA1_c00420 0.65 -1.3
47,268 - PGA1_c00420 0.75 -0.9
47,279 - PGA1_c00420 0.76 +0.7
47,289 - PGA1_c00420 0.77 -0.6
47,349 + PGA1_c00420 0.84 +0.0
47,350 + PGA1_c00420 0.84 -0.9
47,350 + PGA1_c00420 0.84 -0.6
47,358 - PGA1_c00420 0.85 +0.8
47,425 + -0.8
47,428 + -0.1
47,447 + +0.2
47,447 + +0.2
47,472 + +0.6
47,502 - +0.2
47,531 - +0.0
47,533 + -0.4
47,533 + -0.0
47,533 + +0.2
47,541 - +1.1
47,541 - -1.3
47,541 - -0.4
47,543 + -0.6
47,548 + -0.6
47,551 - +0.4
47,551 - +0.0
47,551 - -1.1
47,556 - +0.4
47,587 - -0.1
47,593 - +0.1
47,604 + +0.4
47,655 - PGA1_c00430 0.11 +0.7
47,682 + PGA1_c00430 0.13 +0.5
47,703 + PGA1_c00430 0.15 +0.0
47,712 - PGA1_c00430 0.16 +0.7
47,714 + PGA1_c00430 0.16 +0.8
47,774 + PGA1_c00430 0.21 -1.4
47,862 - PGA1_c00430 0.28 +0.2
47,869 + PGA1_c00430 0.28 +0.0
47,887 + PGA1_c00430 0.30 -0.5
47,925 - PGA1_c00430 0.33 -0.2
48,002 - PGA1_c00430 0.39 -0.8
48,059 + PGA1_c00430 0.43 -0.1
48,067 - PGA1_c00430 0.44 -0.5
48,067 - PGA1_c00430 0.44 -1.6
48,067 - PGA1_c00430 0.44 -1.8
48,161 - PGA1_c00430 0.51 -1.3
48,249 - PGA1_c00430 0.58 -1.8
48,285 - PGA1_c00430 0.61 -2.2
48,287 + PGA1_c00430 0.61 +0.3
48,356 - PGA1_c00430 0.67 +0.2
48,367 + PGA1_c00430 0.68 -0.6
48,380 + PGA1_c00430 0.69 -0.6
48,390 + PGA1_c00430 0.70 -0.4
48,405 - PGA1_c00430 0.71 +0.0

Or see this region's nucleotide sequence