Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31560

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium acetate 10 mM
3,296,267	+		PGA1_c31540	0.45	-1.6
3,296,267	+		PGA1_c31540	0.45	-0.5
3,296,300	+		PGA1_c31540	0.49	+0.4
3,296,313	-		PGA1_c31540	0.50	-1.6
3,296,318	-		PGA1_c31540	0.51	-1.9
3,296,364	+		PGA1_c31540	0.56	+0.1
3,296,372	-		PGA1_c31540	0.57	-0.0
3,296,388	+		PGA1_c31540	0.59	-0.6
3,296,388	-		PGA1_c31540	0.59	-0.0
3,296,396	-		PGA1_c31540	0.60	-0.5
3,296,430	+		PGA1_c31540	0.64	-0.1
3,296,440	+		PGA1_c31540	0.65	-1.0
3,296,478	-		PGA1_c31540	0.70	+0.4
3,296,479	+		PGA1_c31540	0.70	+0.7
3,296,483	-		PGA1_c31540	0.70	-2.2
3,296,483	-		PGA1_c31540	0.70	+0.2
3,296,535	-		PGA1_c31540	0.76	+0.3
3,296,552	-		PGA1_c31540	0.78	+2.3
3,296,612	+		PGA1_c31540	0.86	+0.6
3,296,612	+		PGA1_c31540	0.86	+1.4
3,296,612	+		PGA1_c31540	0.86	+0.4
3,296,620	-		PGA1_c31540	0.86	-1.2
3,296,688	-				-0.1
3,296,739	-				+0.4
3,296,739	-				+0.5
3,296,775	+				-0.3
3,296,782	+				-1.8
3,296,792	+				-0.0
3,296,813	+		PGA1_c31550	0.11	-0.1
3,296,844	+		PGA1_c31550	0.19	-0.8
3,296,902	-		PGA1_c31550	0.34	-0.9
3,296,902	-		PGA1_c31550	0.34	-0.8
3,296,927	+		PGA1_c31550	0.40	-1.3
3,296,927	+		PGA1_c31550	0.40	+0.7
3,297,019	+		PGA1_c31550	0.64	-2.3
3,297,019	+		PGA1_c31550	0.64	-0.8
3,297,054	+		PGA1_c31550	0.73	+0.3
3,297,062	-		PGA1_c31550	0.76	+0.8
3,297,062	-		PGA1_c31550	0.76	-0.2
3,297,114	+		PGA1_c31550	0.89	+0.5
3,297,119	-				-0.2
3,297,208	+				+0.5
3,297,223	-				+1.0
3,297,236	-				-0.0
3,297,282	-		PGA1_c31560	0.14	+0.5
3,297,331	+		PGA1_c31560	0.21	-0.8
3,297,375	-		PGA1_c31560	0.27	+0.0
3,297,381	+		PGA1_c31560	0.28	-0.5
3,297,385	-		PGA1_c31560	0.28	+0.3
3,297,389	-		PGA1_c31560	0.29	-2.2
3,297,424	+		PGA1_c31560	0.34	-1.4
3,297,425	+		PGA1_c31560	0.34	+1.5
3,297,428	-		PGA1_c31560	0.34	+1.9
3,297,430	+		PGA1_c31560	0.35	-1.0
3,297,430	+		PGA1_c31560	0.35	-0.1
3,297,430	+		PGA1_c31560	0.35	-0.4
3,297,430	+		PGA1_c31560	0.35	+0.5
3,297,438	-		PGA1_c31560	0.36	-1.3
3,297,438	-		PGA1_c31560	0.36	+0.6
3,297,438	-		PGA1_c31560	0.36	-0.3
3,297,438	-		PGA1_c31560	0.36	+0.2
3,297,438	-		PGA1_c31560	0.36	+0.3
3,297,438	-		PGA1_c31560	0.36	+1.0
3,297,438	-		PGA1_c31560	0.36	+0.7
3,297,438	-		PGA1_c31560	0.36	-1.0
3,297,438	-		PGA1_c31560	0.36	+0.4
3,297,438	-		PGA1_c31560	0.36	+0.4
3,297,438	-		PGA1_c31560	0.36	+0.5
3,297,463	+		PGA1_c31560	0.39	-0.7
3,297,463	+		PGA1_c31560	0.39	+1.1
3,297,463	+		PGA1_c31560	0.39	+2.0
3,297,471	-		PGA1_c31560	0.40	-0.2
3,297,474	+		PGA1_c31560	0.41	-0.3
3,297,494	+		PGA1_c31560	0.44	-2.2
3,297,547	+		PGA1_c31560	0.51	+1.9
3,297,565	-		PGA1_c31560	0.54	+1.2
3,297,637	+		PGA1_c31560	0.64	-0.8
3,297,645	-		PGA1_c31560	0.65	-1.2
3,297,653	-		PGA1_c31560	0.66	+0.5
3,297,655	+		PGA1_c31560	0.66	+1.2
3,297,656	-		PGA1_c31560	0.67	+1.6
3,297,663	-		PGA1_c31560	0.68	+1.2
3,297,663	-		PGA1_c31560	0.68	+0.6
3,297,682	-		PGA1_c31560	0.70	+0.2
3,297,707	+		PGA1_c31560	0.74	+0.0
3,297,714	+		PGA1_c31560	0.75	-0.3
3,297,715	-		PGA1_c31560	0.75	+1.4
3,297,720	-		PGA1_c31560	0.76	+0.4
3,297,758	+		PGA1_c31560	0.81	-1.6
3,297,788	+		PGA1_c31560	0.85	+1.1
3,297,792	+		PGA1_c31560	0.86	-0.5
3,297,792	+		PGA1_c31560	0.86	-2.2
3,297,823	+				+1.0
3,297,823	+				+0.5
3,297,823	+				-2.4
3,297,823	+				-0.3
3,297,823	+				-0.7
3,297,823	+				-0.3
3,297,831	-				+0.2
3,297,831	-				-0.3
3,297,831	-				+0.1
3,297,831	-				-1.3
3,297,831	-				-1.0
3,297,831	-				+0.6
3,297,853	-				+0.7
3,297,853	-				-0.8
3,297,854	-				+1.4
3,297,892	-				+1.1
3,297,898	+				-0.0
3,297,898	+				+2.0
3,297,917	+				+0.1
3,297,921	-				-1.9
3,297,923	+				+0.1
3,297,931	-				-0.2
3,297,941	+				-0.4
3,297,941	+				-0.1
3,297,949	-				-0.4
3,297,990	+				+0.4
3,297,990	+				-2.1
3,297,999	+				+0.1
3,297,999	+				-0.9
3,297,999	+				+0.4
3,297,999	+				-0.2
3,297,999	+				+2.5
3,297,999	+				+0.3
3,297,999	+				+0.6
3,298,007	-				+2.1
3,298,007	-				-1.1
3,298,007	-				-0.8
3,298,007	-				+0.3
3,298,007	-				-0.5
3,298,024	+				-0.8
3,298,024	+				-0.9
3,298,024	+				+0.0
3,298,024	+				+1.0
3,298,024	+				-0.7
3,298,032	-				+1.0
3,298,032	-				+0.8
3,298,032	-				+0.5
3,298,032	-				-0.2
3,298,032	-				-0.3
3,298,032	-				-0.3
3,298,032	-				+1.0
3,298,042	-				+0.1
3,298,053	+				+0.1
3,298,053	-				+0.6
3,298,053	-				-1.9
3,298,075	+				-0.8
3,298,106	+		PGA1_c31570	0.10	-1.1
3,298,106	+		PGA1_c31570	0.10	+0.1
3,298,106	+		PGA1_c31570	0.10	-1.8
3,298,114	-		PGA1_c31570	0.12	-0.4
3,298,191	+		PGA1_c31570	0.26	-0.7
3,298,191	+		PGA1_c31570	0.26	+0.6
3,298,191	+		PGA1_c31570	0.26	-0.7
3,298,192	+		PGA1_c31570	0.26	-0.0
3,298,200	-		PGA1_c31570	0.28	-0.9
3,298,206	+		PGA1_c31570	0.29	-0.4
3,298,207	-		PGA1_c31570	0.29	-1.8
3,298,241	+		PGA1_c31570	0.35	+0.1
3,298,244	+		PGA1_c31570	0.36	+0.2
3,298,252	-		PGA1_c31570	0.37	-0.5
3,298,254	-		PGA1_c31570	0.37	+0.9
3,298,304	-		PGA1_c31570	0.46	-1.7
3,298,315	+		PGA1_c31570	0.48	+0.3
3,298,323	-		PGA1_c31570	0.50	-0.3
3,298,340	+		PGA1_c31570	0.53	+0.1
3,298,340	+		PGA1_c31570	0.53	+1.0
3,298,340	+		PGA1_c31570	0.53	-0.3
3,298,340	+		PGA1_c31570	0.53	-0.5
3,298,340	+		PGA1_c31570	0.53	-0.4
3,298,340	+		PGA1_c31570	0.53	+0.3
3,298,340	+		PGA1_c31570	0.53	+0.4
3,298,348	-		PGA1_c31570	0.54	-0.5
3,298,348	-		PGA1_c31570	0.54	-1.6
3,298,456	-		PGA1_c31570	0.74	+0.6
3,298,481	+		PGA1_c31570	0.79	+0.6
3,298,490	-		PGA1_c31570	0.80	+0.3
3,298,499	+		PGA1_c31570	0.82	+0.3
3,298,521	+		PGA1_c31570	0.86	+0.5
3,298,526	+		PGA1_c31570	0.87	+0.3
3,298,531	+		PGA1_c31570	0.88	+0.2
3,298,580	-				-1.8