Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3926 and Dshi_3927 are separated by 62 nucleotides Dshi_3927 and Dshi_3928 are separated by 166 nucleotides Dshi_3928 and Dshi_3929 are separated by 50 nucleotides Dshi_3929 and Dshi_3930 are separated by 9 nucleotides
Dshi_3926: Dshi_3926 - hypothetical protein (RefSeq), at 149,344 to 150,306
_3926
Dshi_3927: Dshi_3927 - hypothetical protein (RefSeq), at 150,369 to 150,764
_3927
Dshi_3928: Dshi_3928 - homocysteine S-methyltransferase (RefSeq), at 150,931 to 151,857
_3928
Dshi_3929: Dshi_3929 - hypothetical protein (RefSeq), at 151,908 to 152,129
_3929
Dshi_3930: Dshi_3930 - transcriptional regulator, GntR family (RefSeq), at 152,139 to 152,852
_3930
Position (kb) 150
151
152 Strain fitness (log2 ratio) -1
0
1 at 149.963 kb on + strand, within Dshi_3926 at 150.304 kb on + strand at 150.365 kb on - strand at 150.449 kb on - strand, within Dshi_3927 at 150.630 kb on - strand, within Dshi_3927 at 150.638 kb on + strand, within Dshi_3927 at 150.662 kb on + strand, within Dshi_3927 at 150.881 kb on + strand at 150.894 kb on - strand at 150.951 kb on - strand at 151.048 kb on + strand, within Dshi_3928 at 151.098 kb on - strand, within Dshi_3928 at 151.126 kb on - strand, within Dshi_3928 at 151.303 kb on - strand, within Dshi_3928 at 151.427 kb on - strand, within Dshi_3928 at 151.428 kb on - strand, within Dshi_3928 at 151.489 kb on + strand, within Dshi_3928 at 151.521 kb on + strand, within Dshi_3928 at 151.641 kb on - strand, within Dshi_3928 at 151.710 kb on + strand, within Dshi_3928 at 151.715 kb on + strand, within Dshi_3928 at 151.718 kb on - strand, within Dshi_3928 at 151.723 kb on - strand, within Dshi_3928 at 151.876 kb on + strand at 151.918 kb on + strand at 151.983 kb on - strand, within Dshi_3929 at 152.142 kb on + strand at 152.219 kb on + strand, within Dshi_3930 at 152.219 kb on + strand, within Dshi_3930 at 152.227 kb on - strand, within Dshi_3930 at 152.297 kb on - strand, within Dshi_3930 at 152.398 kb on - strand, within Dshi_3930 at 152.498 kb on + strand, within Dshi_3930 at 152.545 kb on - strand, within Dshi_3930 at 152.569 kb on + strand, within Dshi_3930 at 152.596 kb on + strand, within Dshi_3930 at 152.686 kb on + strand, within Dshi_3930 at 152.706 kb on - strand, within Dshi_3930
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 149,963 + Dshi_3926 0.64 -0.6 150,304 + -0.4 150,365 - -1.0 150,449 - Dshi_3927 0.20 -0.1 150,630 - Dshi_3927 0.66 -0.8 150,638 + Dshi_3927 0.68 +0.6 150,662 + Dshi_3927 0.74 +0.4 150,881 + +0.1 150,894 - -0.1 150,951 - -0.6 151,048 + Dshi_3928 0.13 +0.3 151,098 - Dshi_3928 0.18 -0.4 151,126 - Dshi_3928 0.21 -0.3 151,303 - Dshi_3928 0.40 -1.0 151,427 - Dshi_3928 0.54 +1.0 151,428 - Dshi_3928 0.54 +0.5 151,489 + Dshi_3928 0.60 +0.9 151,521 + Dshi_3928 0.64 -0.8 151,641 - Dshi_3928 0.77 +0.0 151,710 + Dshi_3928 0.84 +1.0 151,715 + Dshi_3928 0.85 +0.1 151,718 - Dshi_3928 0.85 +0.4 151,723 - Dshi_3928 0.85 -0.1 151,876 + +1.4 151,918 + +0.2 151,983 - Dshi_3929 0.34 -0.7 152,142 + -0.5 152,219 + Dshi_3930 0.11 +0.0 152,219 + Dshi_3930 0.11 +0.5 152,227 - Dshi_3930 0.12 -0.4 152,297 - Dshi_3930 0.22 -0.9 152,398 - Dshi_3930 0.36 -0.1 152,498 + Dshi_3930 0.50 +1.0 152,545 - Dshi_3930 0.57 -0.2 152,569 + Dshi_3930 0.60 -0.2 152,596 + Dshi_3930 0.64 -0.5 152,686 + Dshi_3930 0.77 -0.3 152,706 - Dshi_3930 0.79 -0.8
Or see this region's nucleotide sequence