Experiment: BHIS with Oxytetracycline 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3978 and BT3979 are separated by 34 nucleotides BT3979 and BT3980 overlap by 10 nucleotides BT3980 and BT3981 overlap by 1 nucleotides
BT3978: BT3978 - putative cardiolipin synthetase (NCBI ptt file), at 5,180,435 to 5,181,874
BT3978
BT3979: BT3979 - putative methyltransferase (NCBI ptt file), at 5,181,909 to 5,182,442
BT3979
BT3980: BT3980 - hypothetical protein (NCBI ptt file), at 5,182,433 to 5,183,203
BT3980
BT3981: BT3981 - hypothetical protein (NCBI ptt file), at 5,183,203 to 5,183,889
BT3981
Position (kb)
5181
5182
5183 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5180.925 kb on + strand, within BT3978 at 5180.926 kb on - strand, within BT3978 at 5180.994 kb on + strand, within BT3978 at 5181.022 kb on + strand, within BT3978 at 5181.074 kb on - strand, within BT3978 at 5181.128 kb on - strand, within BT3978 at 5181.146 kb on - strand, within BT3978 at 5181.214 kb on - strand, within BT3978 at 5181.312 kb on + strand, within BT3978 at 5181.441 kb on - strand, within BT3978 at 5181.462 kb on + strand, within BT3978 at 5181.498 kb on + strand, within BT3978 at 5181.650 kb on - strand, within BT3978 at 5181.658 kb on + strand, within BT3978 at 5181.726 kb on - strand, within BT3978 at 5181.890 kb on + strand at 5181.899 kb on + strand at 5181.900 kb on - strand at 5181.905 kb on + strand at 5181.941 kb on - strand at 5182.133 kb on + strand, within BT3979 at 5182.134 kb on - strand, within BT3979 at 5182.137 kb on + strand, within BT3979 at 5182.305 kb on + strand, within BT3979 at 5182.335 kb on - strand, within BT3979 at 5182.373 kb on + strand, within BT3979 at 5182.398 kb on + strand at 5182.425 kb on - strand at 5182.446 kb on - strand at 5182.446 kb on - strand at 5182.484 kb on - strand at 5182.822 kb on + strand, within BT3980 at 5182.824 kb on + strand, within BT3980 at 5183.011 kb on - strand, within BT3980 at 5183.051 kb on - strand, within BT3980 at 5183.215 kb on - strand at 5183.230 kb on - strand at 5183.242 kb on - strand at 5183.265 kb on - strand at 5183.302 kb on - strand, within BT3981 at 5183.366 kb on - strand, within BT3981 at 5183.416 kb on - strand, within BT3981
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Oxytetracycline 0.000390625 mM remove 5,180,925 + BT3978 0.34 +0.1 5,180,926 - BT3978 0.34 +1.1 5,180,994 + BT3978 0.39 +0.3 5,181,022 + BT3978 0.41 +0.3 5,181,074 - BT3978 0.44 -0.7 5,181,128 - BT3978 0.48 +0.9 5,181,146 - BT3978 0.49 -0.7 5,181,214 - BT3978 0.54 -0.3 5,181,312 + BT3978 0.61 +1.0 5,181,441 - BT3978 0.70 +0.3 5,181,462 + BT3978 0.71 +1.0 5,181,498 + BT3978 0.74 +1.0 5,181,650 - BT3978 0.84 -0.7 5,181,658 + BT3978 0.85 -0.4 5,181,726 - BT3978 0.90 +0.3 5,181,890 + +0.7 5,181,899 + -0.4 5,181,900 - -2.0 5,181,905 + -2.0 5,181,941 - -3.1 5,182,133 + BT3979 0.42 -3.5 5,182,134 - BT3979 0.42 -0.7 5,182,137 + BT3979 0.43 -2.6 5,182,305 + BT3979 0.74 -2.0 5,182,335 - BT3979 0.80 -2.7 5,182,373 + BT3979 0.87 +0.3 5,182,398 + -2.4 5,182,425 - -1.4 5,182,446 - +1.7 5,182,446 - +1.3 5,182,484 - -0.7 5,182,822 + BT3980 0.50 -1.7 5,182,824 + BT3980 0.51 -1.3 5,183,011 - BT3980 0.75 -0.7 5,183,051 - BT3980 0.80 -1.3 5,183,215 - -1.3 5,183,230 - -0.4 5,183,242 - -1.1 5,183,265 - +0.3 5,183,302 - BT3981 0.14 -1.7 5,183,366 - BT3981 0.24 +1.3 5,183,416 - BT3981 0.31 -2.3
Or see this region's nucleotide sequence