Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2621

Experiment: BHIS with Oxytetracycline 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Oxytetracycline 0.000390625 mM
3,263,884	+		BT2620	0.50	+0.3
3,263,885	-		BT2620	0.50	-0.7
3,263,885	-		BT2620	0.50	+0.3
3,263,905	+		BT2620	0.51	+0.9
3,263,981	+		BT2620	0.55	-2.0
3,263,982	-		BT2620	0.55	+0.3
3,264,006	-		BT2620	0.56	-0.3
3,264,006	-		BT2620	0.56	-0.7
3,264,018	+		BT2620	0.57	-1.3
3,264,018	+		BT2620	0.57	-0.7
3,264,018	+		BT2620	0.57	-0.7
3,264,019	-		BT2620	0.57	+0.3
3,264,019	-		BT2620	0.57	-1.8
3,264,019	-		BT2620	0.57	-0.7
3,264,019	-		BT2620	0.57	-1.6
3,264,019	-		BT2620	0.57	-2.5
3,264,117	-		BT2620	0.62	-0.7
3,264,117	-		BT2620	0.62	-3.2
3,264,119	-		BT2620	0.62	-1.9
3,264,135	+		BT2620	0.63	-3.3
3,264,143	+		BT2620	0.63	-1.7
3,264,173	+		BT2620	0.65	-1.0
3,264,199	-		BT2620	0.66	-2.0
3,264,203	+		BT2620	0.66	-2.0
3,264,230	+		BT2620	0.68	-0.3
3,264,230	+		BT2620	0.68	-1.0
3,264,265	-		BT2620	0.70	-0.7
3,264,265	-		BT2620	0.70	-1.3
3,264,290	+		BT2620	0.71	-2.0
3,264,304	-		BT2620	0.72	-1.3
3,264,352	-		BT2620	0.74	-0.7
3,264,355	+		BT2620	0.74	+0.6
3,264,356	-		BT2620	0.74	-0.9
3,264,367	+		BT2620	0.75	-0.7
3,264,377	+		BT2620	0.75	-1.7
3,264,456	-		BT2620	0.79	-1.5
3,264,500	+		BT2620	0.82	+0.2
3,264,543	+		BT2620	0.84	-2.0
3,264,556	+		BT2620	0.85	-0.7
3,264,557	-		BT2620	0.85	-2.4
3,264,568	-		BT2620	0.85	-3.2
3,264,612	+		BT2620	0.87	-2.2
3,264,670	-				-1.3
3,264,725	+				-0.7
3,264,726	-				-1.2
3,264,727	+				+0.7
3,264,750	+				+0.3
3,264,813	+				-0.2
3,264,834	-				-2.0
3,264,891	+				-0.3
3,264,894	+				-0.7
3,264,966	+				-2.5
3,265,014	+		BT2621	0.10	-0.2
3,265,014	+		BT2621	0.10	-2.9
3,265,038	+		BT2621	0.12	-1.5
3,265,039	-		BT2621	0.12	-2.6
3,265,048	+		BT2621	0.13	-0.1
3,265,118	+		BT2621	0.18	-2.5
3,265,119	-		BT2621	0.18	-0.7
3,265,119	-		BT2621	0.18	-2.5
3,265,122	+		BT2621	0.18	-0.6
3,265,122	+		BT2621	0.18	-2.0
3,265,122	+		BT2621	0.18	-0.7
3,265,122	+		BT2621	0.18	+1.3
3,265,131	+		BT2621	0.19	-1.3
3,265,132	-		BT2621	0.19	+0.9
3,265,198	+		BT2621	0.24	+0.3
3,265,198	+		BT2621	0.24	-0.7
3,265,203	+		BT2621	0.24	-1.4
3,265,203	+		BT2621	0.24	-0.0
3,265,269	+		BT2621	0.29	+0.3
3,265,329	+		BT2621	0.34	+1.3
3,265,329	+		BT2621	0.34	-0.4
3,265,330	-		BT2621	0.34	-1.5
3,265,334	-		BT2621	0.34	-1.7
3,265,420	+		BT2621	0.41	-0.8
3,265,421	-		BT2621	0.41	-1.7
3,265,429	+		BT2621	0.42	-1.3
3,265,429	+		BT2621	0.42	-1.3
3,265,430	-		BT2621	0.42	+0.3
3,265,451	-		BT2621	0.43	-0.7
3,265,458	+		BT2621	0.44	-0.6
3,265,459	-		BT2621	0.44	-0.7
3,265,495	-		BT2621	0.47	+0.3
3,265,503	+		BT2621	0.47	+0.3
3,265,506	+		BT2621	0.48	+0.3
3,265,506	+		BT2621	0.48	-0.8
3,265,507	-		BT2621	0.48	+0.9
3,265,509	+		BT2621	0.48	-1.0
3,265,512	+		BT2621	0.48	-0.7
3,265,574	-		BT2621	0.53	-0.4
3,265,620	+		BT2621	0.56	-2.9
3,265,627	+		BT2621	0.57	+0.6
3,265,628	-		BT2621	0.57	-1.9
3,265,672	+		BT2621	0.60	-0.7
3,265,672	+		BT2621	0.60	-3.7
3,265,707	+		BT2621	0.63	-0.7
3,265,707	+		BT2621	0.63	+0.3
3,265,708	-		BT2621	0.63	-1.4
3,265,710	+		BT2621	0.63	-1.2
3,265,714	+		BT2621	0.63	-1.4
3,265,714	+		BT2621	0.63	-1.3
3,265,715	-		BT2621	0.63	+1.3
3,265,797	+		BT2621	0.70	-1.2
3,265,840	-		BT2621	0.73	-1.7
3,265,850	+		BT2621	0.74	-0.8
3,265,850	+		BT2621	0.74	-4.8
3,265,866	+		BT2621	0.75	-1.2
3,265,872	+		BT2621	0.75	+0.3
3,265,873	-		BT2621	0.76	-3.0
3,265,922	-		BT2621	0.79	-1.1
3,265,955	+		BT2621	0.82	-1.1
3,265,956	-		BT2621	0.82	-1.3
3,265,973	+		BT2621	0.83	-0.7
3,266,001	+		BT2621	0.85	-0.3
3,266,001	+		BT2621	0.85	+0.3
3,266,014	-		BT2621	0.86	-0.3
3,266,014	-		BT2621	0.86	-2.3
3,266,031	+		BT2621	0.88	+0.3
3,266,032	-		BT2621	0.88	-0.3
3,266,032	-		BT2621	0.88	-0.6
3,266,069	+				-0.9
3,266,093	-				-0.1
3,266,103	+				-1.3
3,266,106	+				-0.1
3,266,107	-				+0.3
3,266,107	-				+0.9
3,266,110	-				-2.0
3,266,112	+				-0.7
3,266,148	+				+0.3
3,266,149	-				-0.7
3,266,151	+				-2.3
3,266,162	-				-0.7
3,266,193	+				+0.3
3,266,194	-				-1.4
3,266,194	-				+0.3
3,266,198	-				-1.9
3,266,203	+				-0.5
3,266,254	+				-0.7
3,266,254	+				+0.1
3,266,257	+				-0.7
3,266,284	+				-0.5
3,266,284	+				-1.8
3,266,284	+				-0.9
3,266,284	+				-0.1
3,266,284	+				+0.3
3,266,284	+				-0.7
3,266,284	+				-0.3
3,266,469	-		BT2622	0.12	-1.9
3,266,469	-		BT2622	0.12	-0.7
3,266,470	+		BT2622	0.12	-2.9
3,266,471	-		BT2622	0.12	+0.3
3,266,471	-		BT2622	0.12	-1.7
3,266,519	+		BT2622	0.15	+0.3
3,266,519	+		BT2622	0.15	+0.3
3,266,519	+		BT2622	0.15	-1.1
3,266,519	+		BT2622	0.15	-0.4
3,266,554	+		BT2622	0.16	-1.0
3,266,554	+		BT2622	0.16	-0.7
3,266,558	+		BT2622	0.16	-1.4
3,266,603	+		BT2622	0.18	-1.2
3,266,604	-		BT2622	0.19	-1.8
3,266,654	+		BT2622	0.21	-0.3
3,266,654	+		BT2622	0.21	-0.7
3,266,654	+		BT2622	0.21	-0.7
3,266,654	+		BT2622	0.21	+0.3
3,266,655	-		BT2622	0.21	-1.0
3,266,657	+		BT2622	0.21	-1.6
3,266,667	+		BT2622	0.21	-0.3
3,266,677	+		BT2622	0.22	-1.3
3,266,683	+		BT2622	0.22	-0.8
3,266,683	+		BT2622	0.22	-0.7
3,266,683	+		BT2622	0.22	+0.4
3,266,694	+		BT2622	0.23	-1.7
3,266,747	+		BT2622	0.25	+0.3
3,266,771	+		BT2622	0.26	+0.3
3,266,771	+		BT2622	0.26	-0.7
3,266,771	+		BT2622	0.26	-0.7
3,266,772	-		BT2622	0.26	-1.4
3,266,852	+		BT2622	0.30	-0.4
3,266,853	-		BT2622	0.30	-0.9
3,266,853	-		BT2622	0.30	+0.3
3,266,927	+		BT2622	0.33	+0.9
3,266,927	+		BT2622	0.33	-0.0
3,266,970	+		BT2622	0.35	-2.3
3,267,099	+		BT2622	0.41	-0.6
3,267,099	+		BT2622	0.41	-0.1
3,267,100	-		BT2622	0.41	+0.3
3,267,108	+		BT2622	0.42	-1.7
3,267,108	+		BT2622	0.42	-1.1
3,267,108	+		BT2622	0.42	-1.3
3,267,109	-		BT2622	0.42	-0.4
3,267,109	-		BT2622	0.42	-0.8
3,267,168	-		BT2622	0.45	-1.3