Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2393

Experiment: BHIS with Oxytetracycline 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Oxytetracycline 0.000390625 mM
2,984,979	+		BT2392	0.28	-0.7
2,984,980	-		BT2392	0.28	-2.7
2,984,987	-		BT2392	0.28	-0.7
2,985,002	+		BT2392	0.30	-1.2
2,985,008	-		BT2392	0.30	-0.5
2,985,078	+		BT2392	0.35	+0.0
2,985,082	+		BT2392	0.36	-1.3
2,985,082	+		BT2392	0.36	-0.7
2,985,082	+		BT2392	0.36	+0.9
2,985,082	+		BT2392	0.36	-1.0
2,985,083	-		BT2392	0.36	-1.0
2,985,083	-		BT2392	0.36	-0.8
2,985,083	-		BT2392	0.36	+0.1
2,985,088	+		BT2392	0.36	+0.3
2,985,088	+		BT2392	0.36	+0.3
2,985,093	-		BT2392	0.37	-0.5
2,985,106	+		BT2392	0.37	-1.5
2,985,107	-		BT2392	0.38	-1.0
2,985,112	+		BT2392	0.38	+0.3
2,985,172	+		BT2392	0.42	-2.3
2,985,173	-		BT2392	0.43	-0.0
2,985,203	-		BT2392	0.45	-0.9
2,985,203	-		BT2392	0.45	-1.0
2,985,279	-		BT2392	0.51	-2.3
2,985,279	-		BT2392	0.51	-2.0
2,985,339	-		BT2392	0.55	-1.7
2,985,376	+		BT2392	0.58	-2.3
2,985,464	+		BT2392	0.65	-0.4
2,985,471	+		BT2392	0.65	-0.7
2,985,471	+		BT2392	0.65	-1.7
2,985,473	+		BT2392	0.65	+0.3
2,985,474	-		BT2392	0.65	+0.3
2,985,501	+		BT2392	0.67	-1.3
2,985,502	-		BT2392	0.67	-1.3
2,985,516	-		BT2392	0.68	-0.6
2,985,516	-		BT2392	0.68	-1.3
2,985,516	-		BT2392	0.68	-1.3
2,985,519	+		BT2392	0.69	-2.3
2,985,520	-		BT2392	0.69	-0.7
2,985,520	-		BT2392	0.69	-2.8
2,985,525	+		BT2392	0.69	-1.3
2,985,526	-		BT2392	0.69	+0.0
2,985,542	+		BT2392	0.70	-1.7
2,985,598	+		BT2392	0.75	-1.8
2,985,598	+		BT2392	0.75	-2.6
2,985,599	-		BT2392	0.75	+0.0
2,985,618	+		BT2392	0.76	-0.9
2,985,619	-		BT2392	0.76	-0.7
2,985,674	+		BT2392	0.80	-0.5
2,985,715	+		BT2392	0.84	-1.7
2,985,718	-		BT2392	0.84	-1.7
2,985,718	-		BT2392	0.84	-1.9
2,985,734	+		BT2392	0.85	-0.7
2,985,735	-		BT2392	0.85	-1.6
2,985,792	-		BT2392	0.89	-0.9
2,985,807	+				-2.3
2,985,937	+				+0.3
2,985,971	+				+0.3
2,985,971	+				-1.7
2,986,016	+				-0.7
2,986,061	+				+0.3
2,986,098	-				-1.4
2,986,098	-				-3.0
2,986,098	-				+0.3
2,986,105	-				-0.9
2,986,129	-				-4.3
2,986,130	+				-0.7
2,986,138	-				-0.4
2,986,167	-				-1.3
2,986,207	-				-0.2
2,986,251	+				+0.5
2,986,251	+				-2.1
2,986,252	-				-0.9
2,986,253	+				-0.2
2,986,299	-		BT2393	0.11	-1.7
2,986,299	-		BT2393	0.11	-1.3
2,986,303	-		BT2393	0.11	-1.3
2,986,317	+		BT2393	0.12	-2.3
2,986,331	+		BT2393	0.12	-1.3
2,986,616	+		BT2393	0.22	+0.3
2,986,616	+		BT2393	0.22	+0.3
2,986,617	-		BT2393	0.22	-1.7
2,986,696	-		BT2393	0.24	-2.0
2,986,696	-		BT2393	0.24	-1.3
2,986,708	+		BT2393	0.25	-1.3
2,986,708	+		BT2393	0.25	-1.7
2,986,709	-		BT2393	0.25	-1.3
2,986,709	-		BT2393	0.25	+0.3
2,986,729	+		BT2393	0.25	-1.0
2,986,741	+		BT2393	0.26	-0.7
2,986,742	-		BT2393	0.26	-0.0
2,986,778	+		BT2393	0.27	-0.5
2,986,848	-		BT2393	0.29	+0.3
2,986,849	+		BT2393	0.29	-0.7
2,986,878	-		BT2393	0.30	-0.7
2,986,889	+		BT2393	0.30	-0.6
2,986,890	-		BT2393	0.31	-0.7
2,986,894	-		BT2393	0.31	+0.3
2,986,913	+		BT2393	0.31	-2.3
2,986,965	+		BT2393	0.33	+1.3
2,986,966	-		BT2393	0.33	-1.0
2,986,980	+		BT2393	0.33	-1.5
2,987,055	-		BT2393	0.36	-1.7
2,987,055	-		BT2393	0.36	+0.2
2,987,106	+		BT2393	0.38	-2.8
2,987,107	-		BT2393	0.38	+0.3
2,987,107	-		BT2393	0.38	+0.3
2,987,139	+		BT2393	0.39	-1.7
2,987,139	+		BT2393	0.39	-1.7
2,987,140	-		BT2393	0.39	-0.9
2,987,255	-		BT2393	0.42	-1.4
2,987,255	-		BT2393	0.42	+0.3
2,987,256	+		BT2393	0.42	-1.3
2,987,256	+		BT2393	0.42	-3.0
2,987,256	+		BT2393	0.42	-1.0
2,987,257	-		BT2393	0.42	-0.7
2,987,301	+		BT2393	0.44	-1.7
2,987,302	-		BT2393	0.44	-1.0
2,987,322	-		BT2393	0.45	-2.3
2,987,377	+		BT2393	0.46	+0.0
2,987,378	-		BT2393	0.46	-0.5
2,987,391	+		BT2393	0.47	+0.3
2,987,392	-		BT2393	0.47	-0.7
2,987,393	+		BT2393	0.47	-1.3
2,987,426	+		BT2393	0.48	-0.7
2,987,428	+		BT2393	0.48	-0.7
2,987,476	-		BT2393	0.50	-0.6
2,987,476	-		BT2393	0.50	-1.6
2,987,476	-		BT2393	0.50	-1.7
2,987,597	+		BT2393	0.53	-0.5
2,987,598	-		BT2393	0.53	-0.3
2,987,603	-		BT2393	0.54	-0.9
2,987,603	-		BT2393	0.54	-2.0
2,987,605	+		BT2393	0.54	-0.3
2,987,606	-		BT2393	0.54	-1.6
2,987,653	-		BT2393	0.55	-0.7
2,987,693	-		BT2393	0.57	-1.9
2,987,710	+		BT2393	0.57	+0.3
2,987,710	+		BT2393	0.57	-2.3
2,987,710	+		BT2393	0.57	-0.1
2,987,711	-		BT2393	0.57	+0.3
2,987,711	-		BT2393	0.57	+0.3
2,987,711	-		BT2393	0.57	-0.7
2,987,873	-		BT2393	0.62	+0.3
2,988,014	+		BT2393	0.67	-2.7
2,988,015	-		BT2393	0.67	-1.4
2,988,025	+		BT2393	0.67	-1.1
2,988,077	+		BT2393	0.69	-0.4
2,988,102	+		BT2393	0.70	-0.7
2,988,105	+		BT2393	0.70	-1.1
2,988,160	+				-1.7
2,988,162	+		BT2393	0.72	+0.3
2,988,171	-		BT2393	0.72	-0.6
2,988,178	-		BT2393	0.72	-2.5
2,988,195	-		BT2393	0.73	-1.8
2,988,195	-		BT2393	0.73	-0.7
2,988,265	+		BT2393	0.75	-1.0
2,988,266	-		BT2393	0.75	+0.3
2,988,266	-		BT2393	0.75	-1.3
2,988,266	-		BT2393	0.75	+2.3
2,988,266	-		BT2393	0.75	-0.6
2,988,266	-		BT2393	0.75	-1.3
2,988,317	-		BT2393	0.77	-0.3
2,988,335	+		BT2393	0.77	-1.7
2,988,336	-		BT2393	0.77	-2.5
2,988,340	+		BT2393	0.78	-0.7
2,988,341	-		BT2393	0.78	-0.7
2,988,374	+		BT2393	0.79	-0.7
2,988,375	-		BT2393	0.79	-0.7
2,988,498	+		BT2393	0.83	-0.7
2,988,547	+		BT2393	0.84	-0.3
2,988,548	-		BT2393	0.84	-1.4
2,988,556	-		BT2393	0.85	-1.8
2,988,608	+		BT2393	0.86	+0.3
2,988,609	-		BT2393	0.86	-1.8
2,988,610	+		BT2393	0.86	-0.4
2,988,760	+				+0.9
2,988,848	-				-2.3
2,988,865	-				+1.4
2,988,872	+				-0.7
2,988,984	-				-0.1
2,988,984	-				-1.7
2,988,985	+				-1.5
2,989,042	-				+0.3
2,989,145	-				-0.7
2,989,331	-		BT2394	0.14	-0.9
2,989,369	+		BT2394	0.16	-1.3
2,989,387	+		BT2394	0.17	-2.0
2,989,390	+		BT2394	0.17	-1.0
2,989,405	-		BT2394	0.18	-0.7
2,989,473	+		BT2394	0.22	+0.3
2,989,513	+		BT2394	0.24	-0.9
2,989,627	+		BT2394	0.29	-1.1
2,989,627	+		BT2394	0.29	+0.3
2,989,627	+		BT2394	0.29	-1.5
2,989,627	+		BT2394	0.29	-1.3
2,989,628	-		BT2394	0.29	-2.0
2,989,630	-		BT2394	0.30	-0.0
2,989,630	-		BT2394	0.30	+0.3
2,989,655	-		BT2394	0.31	+0.3
2,989,655	-		BT2394	0.31	-0.5
2,989,662	-		BT2394	0.31	-2.7
2,989,778	-		BT2394	0.37	-1.9
2,989,828	+		BT2394	0.40	+0.3
2,989,828	+		BT2394	0.40	+0.3
2,989,828	+		BT2394	0.40	-2.5
2,989,892	-		BT2394	0.43	-1.5
2,989,892	-		BT2394	0.43	+0.6
2,989,898	+		BT2394	0.43	-2.5
2,989,898	+		BT2394	0.43	-1.7
2,989,900	+		BT2394	0.43	-2.0
2,989,901	-		BT2394	0.43	-1.1
2,989,901	-		BT2394	0.43	-0.7
2,989,927	+		BT2394	0.45	-1.5
2,989,928	-		BT2394	0.45	-2.7
2,989,928	-		BT2394	0.45	-0.7
2,989,971	-		BT2394	0.47	-0.7
2,989,987	+		BT2394	0.48	-0.8
2,989,996	+		BT2394	0.48	+0.3
2,989,996	+		BT2394	0.48	-0.9
2,989,996	+		BT2394	0.48	-0.6
2,990,001	-		BT2394	0.48	-0.7
2,990,001	-		BT2394	0.48	-0.8
2,990,001	-		BT2394	0.48	-1.0
2,990,001	-		BT2394	0.48	+0.3