Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00030 and PGA1_65p00040 are separated by 162 nucleotides PGA1_65p00040 and PGA1_65p00050 are separated by 211 nucleotides
PGA1_65p00030: PGA1_65p00030 - putative type I secretion system ATPase, at 2,776 to 4,539
_65p00030
PGA1_65p00040: PGA1_65p00040 - RTX toxins and related Ca2+-binding proteins, at 4,702 to 7,215
_65p00040
PGA1_65p00050: PGA1_65p00050 - hypothetical protein, at 7,427 to 8,269
_65p00050
Position (kb) 4
5
6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.928 kb on + strand, within PGA1_65p00030 at 3.937 kb on - strand, within PGA1_65p00030 at 4.047 kb on + strand, within PGA1_65p00030 at 4.129 kb on + strand, within PGA1_65p00030 at 4.318 kb on + strand, within PGA1_65p00030 at 4.402 kb on + strand at 4.542 kb on - strand at 4.556 kb on - strand at 4.607 kb on + strand at 4.657 kb on - strand at 4.936 kb on + strand at 4.969 kb on + strand, within PGA1_65p00040 at 5.028 kb on - strand, within PGA1_65p00040 at 5.028 kb on - strand at 5.134 kb on - strand, within PGA1_65p00040 at 5.289 kb on - strand at 5.317 kb on - strand, within PGA1_65p00040 at 5.428 kb on + strand, within PGA1_65p00040 at 5.497 kb on + strand, within PGA1_65p00040 at 5.542 kb on - strand, within PGA1_65p00040 at 5.552 kb on + strand, within PGA1_65p00040 at 5.562 kb on + strand, within PGA1_65p00040 at 5.667 kb on + strand, within PGA1_65p00040 at 5.764 kb on - strand, within PGA1_65p00040 at 5.827 kb on + strand, within PGA1_65p00040 at 5.827 kb on + strand, within PGA1_65p00040 at 5.827 kb on + strand, within PGA1_65p00040 at 5.834 kb on + strand, within PGA1_65p00040 at 5.835 kb on - strand, within PGA1_65p00040 at 5.876 kb on - strand, within PGA1_65p00040 at 5.970 kb on - strand, within PGA1_65p00040 at 6.162 kb on - strand, within PGA1_65p00040 at 6.172 kb on + strand, within PGA1_65p00040 at 6.330 kb on + strand, within PGA1_65p00040 at 6.446 kb on - strand, within PGA1_65p00040 at 6.603 kb on - strand, within PGA1_65p00040 at 6.776 kb on - strand, within PGA1_65p00040 at 6.987 kb on + strand at 7.018 kb on - strand at 7.018 kb on - strand at 7.018 kb on - strand at 7.054 kb on + strand at 7.062 kb on - strand at 7.325 kb on - strand at 7.475 kb on + strand at 7.492 kb on - strand at 7.573 kb on + strand, within PGA1_65p00050 at 8.058 kb on - strand, within PGA1_65p00050 at 8.060 kb on + strand, within PGA1_65p00050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM remove 3,928 + PGA1_65p00030 0.65 +3.0 3,937 - PGA1_65p00030 0.66 +0.6 4,047 + PGA1_65p00030 0.72 +0.3 4,129 + PGA1_65p00030 0.77 -0.3 4,318 + PGA1_65p00030 0.87 +1.5 4,402 + -0.3 4,542 - +0.6 4,556 - +0.2 4,607 + +0.0 4,657 - +0.8 4,936 + +1.2 4,969 + PGA1_65p00040 0.11 +1.3 5,028 - PGA1_65p00040 0.13 -0.6 5,028 - -0.5 5,134 - PGA1_65p00040 0.17 +0.5 5,289 - +0.0 5,317 - PGA1_65p00040 0.24 +1.3 5,428 + PGA1_65p00040 0.29 +1.2 5,497 + PGA1_65p00040 0.32 -1.0 5,542 - PGA1_65p00040 0.33 -1.1 5,552 + PGA1_65p00040 0.34 +0.5 5,562 + PGA1_65p00040 0.34 +1.0 5,667 + PGA1_65p00040 0.38 +1.4 5,764 - PGA1_65p00040 0.42 +2.4 5,827 + PGA1_65p00040 0.45 -1.1 5,827 + PGA1_65p00040 0.45 +1.7 5,827 + PGA1_65p00040 0.45 -1.1 5,834 + PGA1_65p00040 0.45 -0.8 5,835 - PGA1_65p00040 0.45 +0.1 5,876 - PGA1_65p00040 0.47 +1.6 5,970 - PGA1_65p00040 0.50 +2.0 6,162 - PGA1_65p00040 0.58 +0.5 6,172 + PGA1_65p00040 0.58 -1.9 6,330 + PGA1_65p00040 0.65 -0.3 6,446 - PGA1_65p00040 0.69 +1.0 6,603 - PGA1_65p00040 0.76 -1.0 6,776 - PGA1_65p00040 0.82 +2.5 6,987 + -0.3 7,018 - +1.5 7,018 - +1.5 7,018 - -1.1 7,054 + +0.5 7,062 - +0.6 7,325 - +0.7 7,475 + -0.3 7,492 - +0.8 7,573 + PGA1_65p00050 0.17 -1.5 8,058 - PGA1_65p00050 0.75 -0.1 8,060 + PGA1_65p00050 0.75 +0.0
Or see this region's nucleotide sequence