Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00270

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00260 and PGA1_78p00270 are separated by 36 nucleotidesPGA1_78p00270 and PGA1_78p00280 are separated by 149 nucleotides PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536 _78p00260 PGA1_78p00270: PGA1_78p00270 - lipoyl synthase LipA, at 32,573 to 33,541 _78p00270 PGA1_78p00280: PGA1_78p00280 - putative sodium/alanine symporter, at 33,691 to 35,067 _78p00280 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 31.644 kb on + strand, within PGA1_78p00260at 32.242 kb on - strand, within PGA1_78p00260at 32.564 kb on - strandat 33.155 kb on + strand, within PGA1_78p00270at 33.351 kb on - strand, within PGA1_78p00270at 33.366 kb on + strand, within PGA1_78p00270at 33.374 kb on - strand, within PGA1_78p00270at 33.434 kb on + strand, within PGA1_78p00270at 33.434 kb on + strand, within PGA1_78p00270at 33.442 kb on - strand, within PGA1_78p00270at 33.511 kb on + strandat 34.150 kb on + strand, within PGA1_78p00280at 34.197 kb on + strand, within PGA1_78p00280at 34.205 kb on + strand, within PGA1_78p00280at 34.205 kb on - strand, within PGA1_78p00280at 34.409 kb on - strand, within PGA1_78p00280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
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31,644 + PGA1_78p00260 0.35 +0.3
32,242 - PGA1_78p00260 0.79 +0.7
32,564 - +0.2
33,155 + PGA1_78p00270 0.60 +1.0
33,351 - PGA1_78p00270 0.80 +1.0
33,366 + PGA1_78p00270 0.82 -0.3
33,374 - PGA1_78p00270 0.83 +0.6
33,434 + PGA1_78p00270 0.89 +1.2
33,434 + PGA1_78p00270 0.89 +0.3
33,442 - PGA1_78p00270 0.90 +0.5
33,511 + +1.0
34,150 + PGA1_78p00280 0.33 +0.6
34,197 + PGA1_78p00280 0.37 +1.9
34,205 + PGA1_78p00280 0.37 +1.2
34,205 - PGA1_78p00280 0.37 +0.3
34,409 - PGA1_78p00280 0.52 +0.3

Or see this region's nucleotide sequence