Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02320 and PGA1_262p02330 are separated by 2 nucleotides PGA1_262p02330 and PGA1_262p02340 overlap by 4 nucleotides PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides
PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444
_262p02320
PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634
_262p02330
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
Position (kb) 255
256
257 Strain fitness (log2 ratio) -1
0
1 at 254.590 kb on - strand, within PGA1_262p02320 at 254.592 kb on + strand, within PGA1_262p02320 at 254.655 kb on - strand, within PGA1_262p02320 at 254.765 kb on - strand, within PGA1_262p02320 at 254.770 kb on - strand, within PGA1_262p02320 at 254.847 kb on + strand, within PGA1_262p02320 at 254.855 kb on + strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.948 kb on + strand, within PGA1_262p02320 at 254.956 kb on - strand, within PGA1_262p02320 at 254.994 kb on + strand, within PGA1_262p02320 at 255.013 kb on - strand, within PGA1_262p02320 at 255.142 kb on - strand, within PGA1_262p02320 at 255.198 kb on + strand, within PGA1_262p02320 at 255.201 kb on - strand, within PGA1_262p02320 at 255.228 kb on - strand, within PGA1_262p02320 at 255.246 kb on + strand, within PGA1_262p02320 at 255.254 kb on - strand, within PGA1_262p02320 at 255.463 kb on + strand at 255.598 kb on - strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.705 kb on - strand, within PGA1_262p02330 at 255.794 kb on + strand, within PGA1_262p02330 at 255.873 kb on - strand, within PGA1_262p02330 at 255.895 kb on + strand, within PGA1_262p02330 at 255.962 kb on - strand, within PGA1_262p02330 at 256.032 kb on + strand, within PGA1_262p02330 at 256.094 kb on - strand, within PGA1_262p02330 at 256.100 kb on + strand, within PGA1_262p02330 at 256.225 kb on + strand, within PGA1_262p02330 at 256.432 kb on - strand, within PGA1_262p02330 at 256.490 kb on + strand, within PGA1_262p02330 at 256.509 kb on + strand, within PGA1_262p02330 at 256.575 kb on - strand at 256.585 kb on - strand at 256.609 kb on + strand at 256.644 kb on + strand at 256.652 kb on - strand at 256.666 kb on - strand at 257.175 kb on - strand, within PGA1_262p02340 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM remove 254,590 - PGA1_262p02320 0.48 -0.6 254,592 + PGA1_262p02320 0.48 -0.1 254,655 - PGA1_262p02320 0.52 +0.0 254,765 - PGA1_262p02320 0.59 -1.6 254,770 - PGA1_262p02320 0.59 +0.2 254,847 + PGA1_262p02320 0.64 -0.6 254,855 + PGA1_262p02320 0.64 +0.1 254,863 - PGA1_262p02320 0.65 -0.4 254,863 - PGA1_262p02320 0.65 +0.6 254,863 - PGA1_262p02320 0.65 -0.2 254,863 - PGA1_262p02320 0.65 -0.5 254,863 - PGA1_262p02320 0.65 +1.5 254,948 + PGA1_262p02320 0.70 +0.8 254,956 - PGA1_262p02320 0.70 +1.4 254,994 + PGA1_262p02320 0.73 +1.6 255,013 - PGA1_262p02320 0.74 +0.0 255,142 - PGA1_262p02320 0.82 -0.2 255,198 + PGA1_262p02320 0.85 +1.3 255,201 - PGA1_262p02320 0.85 -0.2 255,228 - PGA1_262p02320 0.87 -0.9 255,246 + PGA1_262p02320 0.88 +0.9 255,254 - PGA1_262p02320 0.88 -0.7 255,463 + +0.6 255,598 - PGA1_262p02330 0.13 +1.3 255,674 + PGA1_262p02330 0.19 -0.7 255,674 + PGA1_262p02330 0.19 +0.9 255,705 - PGA1_262p02330 0.22 +0.9 255,794 + PGA1_262p02330 0.29 -0.8 255,873 - PGA1_262p02330 0.36 -0.2 255,895 + PGA1_262p02330 0.38 +0.4 255,962 - PGA1_262p02330 0.43 +1.2 256,032 + PGA1_262p02330 0.49 +0.1 256,094 - PGA1_262p02330 0.54 +0.1 256,100 + PGA1_262p02330 0.55 +0.3 256,225 + PGA1_262p02330 0.65 +0.2 256,432 - PGA1_262p02330 0.83 +1.6 256,490 + PGA1_262p02330 0.88 +0.5 256,509 + PGA1_262p02330 0.89 +0.7 256,575 - +0.0 256,585 - +0.5 256,609 + +1.0 256,644 + +0.8 256,652 - -0.8 256,666 - -0.5 257,175 - PGA1_262p02340 0.84 +0.1 257,287 + +1.3 257,295 - +0.1 257,300 + +0.6 257,445 - +0.1 257,532 + PGA1_262p02350 0.18 +0.5 257,532 + PGA1_262p02350 0.18 -0.4 257,532 + PGA1_262p02350 0.18 +0.0 257,540 + PGA1_262p02350 0.19 +0.0 257,540 + PGA1_262p02350 0.19 -1.6 257,570 - PGA1_262p02350 0.22 +0.1 257,619 - PGA1_262p02350 0.28 +0.6
Or see this region's nucleotide sequence