Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01830

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_262p01820 and PGA1_262p01830 are separated by 551 nucleotidesPGA1_262p01830 and PGA1_262p01840 are separated by 0 nucleotides PGA1_262p01820: PGA1_262p01820 - Protein of unknown function (DUF3726)., at 200,251 to 200,901 _262p01820 PGA1_262p01830: PGA1_262p01830 - putative aminomethyltransferase, at 201,453 to 202,559 _262p01830 PGA1_262p01840: PGA1_262p01840 - ATP-dependent AMP binding enzyme, at 202,560 to 204,191 _262p01840 Position (kb) 201 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1at 200.737 kb on - strand, within PGA1_262p01820at 200.761 kb on + strand, within PGA1_262p01820at 200.761 kb on + strand, within PGA1_262p01820at 200.773 kb on + strand, within PGA1_262p01820at 200.786 kb on - strand, within PGA1_262p01820at 200.872 kb on - strandat 200.905 kb on + strandat 200.905 kb on + strandat 200.905 kb on + strandat 200.913 kb on - strandat 200.918 kb on - strandat 200.923 kb on + strandat 200.977 kb on + strandat 200.977 kb on + strandat 200.977 kb on + strandat 200.985 kb on - strandat 200.985 kb on - strandat 200.985 kb on - strandat 200.992 kb on + strandat 200.999 kb on + strandat 201.073 kb on + strandat 201.074 kb on - strandat 201.074 kb on - strandat 201.081 kb on - strandat 201.082 kb on - strandat 201.112 kb on - strandat 201.135 kb on + strandat 201.181 kb on + strandat 201.254 kb on + strandat 201.257 kb on + strandat 201.320 kb on + strandat 201.320 kb on + strandat 201.455 kb on - strandat 201.465 kb on + strandat 201.478 kb on - strandat 201.483 kb on - strandat 201.494 kb on + strandat 201.494 kb on + strandat 201.502 kb on - strandat 201.502 kb on - strandat 201.518 kb on - strandat 201.595 kb on + strand, within PGA1_262p01830at 201.595 kb on + strand, within PGA1_262p01830at 201.674 kb on - strand, within PGA1_262p01830at 201.784 kb on + strand, within PGA1_262p01830at 201.838 kb on + strand, within PGA1_262p01830at 201.859 kb on - strand, within PGA1_262p01830at 201.859 kb on - strand, within PGA1_262p01830at 201.867 kb on + strand, within PGA1_262p01830at 201.879 kb on - strand, within PGA1_262p01830at 201.884 kb on + strand, within PGA1_262p01830at 201.893 kb on - strand, within PGA1_262p01830at 201.899 kb on + strand, within PGA1_262p01830at 201.900 kb on + strand, within PGA1_262p01830at 201.903 kb on - strand, within PGA1_262p01830at 201.918 kb on - strand, within PGA1_262p01830at 201.955 kb on + strand, within PGA1_262p01830at 201.974 kb on + strand, within PGA1_262p01830at 202.085 kb on + strand, within PGA1_262p01830at 202.250 kb on - strand, within PGA1_262p01830at 202.279 kb on + strand, within PGA1_262p01830at 202.310 kb on + strand, within PGA1_262p01830at 202.318 kb on - strand, within PGA1_262p01830at 202.329 kb on - strand, within PGA1_262p01830at 202.329 kb on - strand, within PGA1_262p01830at 202.364 kb on - strand, within PGA1_262p01830at 202.369 kb on - strand, within PGA1_262p01830at 202.405 kb on + strand, within PGA1_262p01830at 202.405 kb on + strand, within PGA1_262p01830at 202.405 kb on + strand, within PGA1_262p01830at 202.413 kb on - strand, within PGA1_262p01830at 202.413 kb on - strand, within PGA1_262p01830at 202.413 kb on - strand, within PGA1_262p01830at 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.472 kb on + strandat 202.472 kb on + strandat 202.472 kb on - strandat 202.472 kb on - strandat 202.472 kb on - strandat 202.489 kb on + strandat 202.489 kb on + strandat 202.564 kb on - strandat 202.564 kb on - strandat 202.566 kb on + strandat 202.648 kb on + strandat 202.754 kb on - strand, within PGA1_262p01840at 202.799 kb on - strand, within PGA1_262p01840at 202.914 kb on - strand, within PGA1_262p01840at 202.925 kb on + strand, within PGA1_262p01840at 202.933 kb on - strand, within PGA1_262p01840at 202.938 kb on - strand, within PGA1_262p01840at 203.005 kb on - strand, within PGA1_262p01840at 203.005 kb on - strand, within PGA1_262p01840at 203.083 kb on + strand, within PGA1_262p01840at 203.106 kb on + strand, within PGA1_262p01840at 203.145 kb on - strand, within PGA1_262p01840at 203.152 kb on + strand, within PGA1_262p01840at 203.152 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.230 kb on - strand, within PGA1_262p01840at 203.230 kb on - strand, within PGA1_262p01840at 203.230 kb on - strand, within PGA1_262p01840at 203.283 kb on - strand, within PGA1_262p01840at 203.478 kb on + strand, within PGA1_262p01840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
remove
200,737 - PGA1_262p01820 0.75 -0.3
200,761 + PGA1_262p01820 0.78 -1.5
200,761 + PGA1_262p01820 0.78 +1.0
200,773 + PGA1_262p01820 0.80 +1.2
200,786 - PGA1_262p01820 0.82 -0.7
200,872 - +0.1
200,905 + +0.3
200,905 + +0.4
200,905 + +0.2
200,913 - -0.6
200,918 - +0.5
200,923 + +0.3
200,977 + -0.1
200,977 + -0.6
200,977 + +0.4
200,985 - +0.3
200,985 - +0.9
200,985 - -2.3
200,992 + -1.2
200,999 + -0.7
201,073 + +0.0
201,074 - +0.5
201,074 - +0.4
201,081 - +0.1
201,082 - -0.5
201,112 - +0.4
201,135 + +0.8
201,181 + +0.5
201,254 + -0.8
201,257 + +0.6
201,320 + -0.0
201,320 + -0.5
201,455 - +0.3
201,465 + +0.1
201,478 - -0.3
201,483 - +0.4
201,494 + +0.1
201,494 + +0.5
201,502 - -0.2
201,502 - +0.0
201,518 - -1.5
201,595 + PGA1_262p01830 0.13 -0.1
201,595 + PGA1_262p01830 0.13 -1.0
201,674 - PGA1_262p01830 0.20 -0.8
201,784 + PGA1_262p01830 0.30 -1.2
201,838 + PGA1_262p01830 0.35 +0.6
201,859 - PGA1_262p01830 0.37 -0.5
201,859 - PGA1_262p01830 0.37 -1.1
201,867 + PGA1_262p01830 0.37 -0.2
201,879 - PGA1_262p01830 0.38 +0.3
201,884 + PGA1_262p01830 0.39 +0.5
201,893 - PGA1_262p01830 0.40 +0.1
201,899 + PGA1_262p01830 0.40 -0.5
201,900 + PGA1_262p01830 0.40 +1.3
201,903 - PGA1_262p01830 0.41 +1.1
201,918 - PGA1_262p01830 0.42 -1.6
201,955 + PGA1_262p01830 0.45 -2.9
201,974 + PGA1_262p01830 0.47 -1.3
202,085 + PGA1_262p01830 0.57 -0.4
202,250 - PGA1_262p01830 0.72 -0.3
202,279 + PGA1_262p01830 0.75 -1.3
202,310 + PGA1_262p01830 0.77 +0.2
202,318 - PGA1_262p01830 0.78 -1.1
202,329 - PGA1_262p01830 0.79 +0.1
202,329 - PGA1_262p01830 0.79 -0.7
202,364 - PGA1_262p01830 0.82 -0.4
202,369 - PGA1_262p01830 0.83 -0.4
202,405 + PGA1_262p01830 0.86 +0.2
202,405 + PGA1_262p01830 0.86 -0.9
202,405 + PGA1_262p01830 0.86 -0.9
202,413 - PGA1_262p01830 0.87 -0.3
202,413 - PGA1_262p01830 0.87 -0.4
202,413 - PGA1_262p01830 0.87 +0.7
202,464 + +0.2
202,464 + +0.4
202,464 + +0.2
202,464 + +1.1
202,464 + -0.9
202,464 + -0.1
202,472 + -0.6
202,472 + -1.7
202,472 - +0.1
202,472 - +0.3
202,472 - -0.7
202,489 + +0.0
202,489 + +0.0
202,564 - +0.4
202,564 - +0.0
202,566 + +0.1
202,648 + +0.0
202,754 - PGA1_262p01840 0.12 +0.3
202,799 - PGA1_262p01840 0.15 -0.5
202,914 - PGA1_262p01840 0.22 -0.1
202,925 + PGA1_262p01840 0.22 -0.9
202,933 - PGA1_262p01840 0.23 -0.3
202,938 - PGA1_262p01840 0.23 +0.1
203,005 - PGA1_262p01840 0.27 +0.2
203,005 - PGA1_262p01840 0.27 -0.6
203,083 + PGA1_262p01840 0.32 +0.2
203,106 + PGA1_262p01840 0.33 -0.2
203,145 - PGA1_262p01840 0.36 +0.4
203,152 + PGA1_262p01840 0.36 +0.1
203,152 + PGA1_262p01840 0.36 -0.2
203,222 + PGA1_262p01840 0.41 -0.3
203,222 + PGA1_262p01840 0.41 +0.0
203,222 + PGA1_262p01840 0.41 -0.8
203,222 + PGA1_262p01840 0.41 -2.1
203,222 + PGA1_262p01840 0.41 -0.5
203,230 - PGA1_262p01840 0.41 -0.6
203,230 - PGA1_262p01840 0.41 +0.2
203,230 - PGA1_262p01840 0.41 +0.2
203,283 - PGA1_262p01840 0.44 -0.4
203,478 + PGA1_262p01840 0.56 +1.0

Or see this region's nucleotide sequence