Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01165

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01160 and PGA1_262p01165 are separated by 59 nucleotidesPGA1_262p01165 and PGA1_262p01170 are separated by 118 nucleotides PGA1_262p01160: PGA1_262p01160 - Uncharacterized iron-regulated membrane protein, at 127,740 to 129,128 _262p01160 PGA1_262p01165: PGA1_262p01165 - hypothetical protein, at 129,188 to 129,568 _262p01165 PGA1_262p01170: PGA1_262p01170 - putative nnrS protein, at 129,687 to 130,910 _262p01170 Position (kb) 129 130Strain fitness (log2 ratio) -1 0 1at 128.410 kb on - strand, within PGA1_262p01160at 128.503 kb on + strand, within PGA1_262p01160at 128.574 kb on - strand, within PGA1_262p01160at 128.762 kb on - strand, within PGA1_262p01160at 128.773 kb on - strand, within PGA1_262p01160at 128.907 kb on - strand, within PGA1_262p01160at 129.123 kb on + strandat 129.124 kb on + strandat 129.167 kb on + strandat 129.176 kb on - strandat 129.190 kb on + strandat 129.238 kb on + strand, within PGA1_262p01165at 129.371 kb on - strand, within PGA1_262p01165at 129.516 kb on - strand, within PGA1_262p01165at 129.516 kb on - strand, within PGA1_262p01165at 129.582 kb on - strandat 129.643 kb on - strandat 129.735 kb on - strandat 129.740 kb on - strandat 129.740 kb on - strandat 129.783 kb on - strandat 129.802 kb on - strandat 130.443 kb on + strand, within PGA1_262p01170at 130.493 kb on + strand, within PGA1_262p01170at 130.504 kb on + strand, within PGA1_262p01170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
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128,410 - PGA1_262p01160 0.48 -0.3
128,503 + PGA1_262p01160 0.55 -0.3
128,574 - PGA1_262p01160 0.60 +1.7
128,762 - PGA1_262p01160 0.74 -1.2
128,773 - PGA1_262p01160 0.74 -0.4
128,907 - PGA1_262p01160 0.84 -0.6
129,123 + -0.7
129,124 + -0.1
129,167 + +1.1
129,176 - -0.5
129,190 + +0.2
129,238 + PGA1_262p01165 0.13 +0.5
129,371 - PGA1_262p01165 0.48 +0.5
129,516 - PGA1_262p01165 0.86 +0.5
129,516 - PGA1_262p01165 0.86 +1.5
129,582 - +1.0
129,643 - -0.4
129,735 - -0.2
129,740 - +0.4
129,740 - +0.2
129,783 - +0.3
129,802 - +1.2
130,443 + PGA1_262p01170 0.62 +0.1
130,493 + PGA1_262p01170 0.66 +0.4
130,504 + PGA1_262p01170 0.67 +0.5

Or see this region's nucleotide sequence