Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00730 and PGA1_262p00740 overlap by 9 nucleotides PGA1_262p00740 and PGA1_262p00750 overlap by 8 nucleotides
PGA1_262p00730: PGA1_262p00730 - putative signal transduction histidine kinase, at 82,225 to 83,316
_262p00730
PGA1_262p00740: PGA1_262p00740 - putative peptidase, family M20/M25/M40, at 83,308 to 84,435
_262p00740
PGA1_262p00750: PGA1_262p00750 - Threonine dehydratase, at 84,428 to 85,453
_262p00750
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.465 kb on - strand, within PGA1_262p00730 at 83.008 kb on + strand, within PGA1_262p00730 at 83.057 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.381 kb on + strand at 83.489 kb on + strand, within PGA1_262p00740 at 83.489 kb on + strand, within PGA1_262p00740 at 83.491 kb on + strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.547 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.617 kb on - strand, within PGA1_262p00740 at 83.660 kb on - strand, within PGA1_262p00740 at 83.869 kb on - strand, within PGA1_262p00740 at 83.971 kb on + strand, within PGA1_262p00740 at 84.125 kb on - strand, within PGA1_262p00740 at 84.189 kb on - strand, within PGA1_262p00740 at 84.251 kb on - strand, within PGA1_262p00740 at 84.291 kb on - strand, within PGA1_262p00740 at 84.331 kb on + strand at 84.569 kb on - strand, within PGA1_262p00750 at 84.629 kb on - strand, within PGA1_262p00750 at 84.738 kb on - strand, within PGA1_262p00750 at 84.813 kb on + strand, within PGA1_262p00750 at 84.915 kb on - strand, within PGA1_262p00750 at 85.055 kb on - strand, within PGA1_262p00750 at 85.273 kb on + strand, within PGA1_262p00750 at 85.390 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM remove 82,465 - PGA1_262p00730 0.22 +0.3 83,008 + PGA1_262p00730 0.72 +0.8 83,057 + PGA1_262p00730 0.76 +0.2 83,066 + PGA1_262p00730 0.77 -0.6 83,066 + PGA1_262p00730 0.77 -1.5 83,381 + -0.7 83,489 + PGA1_262p00740 0.16 -1.3 83,489 + PGA1_262p00740 0.16 +2.3 83,491 + PGA1_262p00740 0.16 -0.4 83,497 - PGA1_262p00740 0.17 +0.8 83,497 - PGA1_262p00740 0.17 +0.4 83,547 - PGA1_262p00740 0.21 +1.3 83,588 - PGA1_262p00740 0.25 -0.6 83,588 - PGA1_262p00740 0.25 +1.2 83,617 - PGA1_262p00740 0.27 +0.0 83,660 - PGA1_262p00740 0.31 +0.7 83,869 - PGA1_262p00740 0.50 +0.9 83,971 + PGA1_262p00740 0.59 -1.4 84,125 - PGA1_262p00740 0.72 +0.4 84,189 - PGA1_262p00740 0.78 +0.5 84,251 - PGA1_262p00740 0.84 +1.6 84,291 - PGA1_262p00740 0.87 +0.7 84,331 + +0.6 84,569 - PGA1_262p00750 0.14 -1.4 84,629 - PGA1_262p00750 0.20 +0.4 84,738 - PGA1_262p00750 0.30 -0.5 84,813 + PGA1_262p00750 0.38 -0.1 84,915 - PGA1_262p00750 0.47 -0.2 85,055 - PGA1_262p00750 0.61 +0.1 85,273 + PGA1_262p00750 0.82 +0.6 85,390 + -1.7 85,392 + +0.8 85,392 + -0.3 85,392 + +0.1 85,392 + +1.0 85,400 - -1.9
Or see this region's nucleotide sequence