Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34410

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
3,607,582	-		PGA1_c34400	0.33	-0.8
3,607,649	-		PGA1_c34400	0.38	-0.0
3,607,708	+		PGA1_c34400	0.42	-0.9
3,607,716	-		PGA1_c34400	0.43	-0.1
3,607,779	+		PGA1_c34400	0.47	-0.7
3,607,820	+		PGA1_c34400	0.50	+0.2
3,607,853	+		PGA1_c34400	0.52	-0.1
3,607,864	+		PGA1_c34400	0.53	+1.0
3,608,020	+		PGA1_c34400	0.64	-0.3
3,608,116	+		PGA1_c34400	0.71	-0.2
3,608,171	+		PGA1_c34400	0.75	+0.5
3,608,224	+		PGA1_c34400	0.79	+0.6
3,608,224	+		PGA1_c34400	0.79	-0.0
3,608,224	+		PGA1_c34400	0.79	+0.3
3,608,224	+		PGA1_c34400	0.79	+0.6
3,608,224	+		PGA1_c34400	0.79	+2.1
3,608,224	+		PGA1_c34400	0.79	-0.0
3,608,224	+		PGA1_c34400	0.79	+0.3
3,608,232	-		PGA1_c34400	0.80	+1.0
3,608,278	-		PGA1_c34400	0.83	-1.3
3,608,333	-		PGA1_c34400	0.87	+1.9
3,608,385	-				-1.6
3,608,385	-				-0.5
3,608,385	-				+0.4
3,608,468	-				-0.8
3,608,615	+				+1.3
3,608,615	+				-1.8
3,608,615	+				-0.4
3,608,661	-		PGA1_c34410	0.11	+1.3
3,608,667	-		PGA1_c34410	0.12	-1.1
3,608,679	-		PGA1_c34410	0.14	+1.4
3,608,682	-		PGA1_c34410	0.14	+0.7
3,608,682	-		PGA1_c34410	0.14	-0.0
3,608,713	+		PGA1_c34410	0.18	+0.4
3,608,713	+		PGA1_c34410	0.18	-1.0
3,608,716	-		PGA1_c34410	0.19	-0.1
3,608,720	+		PGA1_c34410	0.19	+1.8
3,608,748	+		PGA1_c34410	0.23	+0.9
3,608,754	+		PGA1_c34410	0.24	-0.5
3,608,754	+		PGA1_c34410	0.24	+1.1
3,608,789	+		PGA1_c34410	0.29	+0.0
3,608,813	+		PGA1_c34410	0.32	-0.1
3,608,813	+		PGA1_c34410	0.32	+1.2
3,608,852	-		PGA1_c34410	0.37	+0.7
3,608,902	-		PGA1_c34410	0.44	-0.1
3,608,927	+		PGA1_c34410	0.48	+0.9
3,609,005	+		PGA1_c34410	0.59	-1.4
3,609,013	-		PGA1_c34410	0.60	+1.0
3,609,024	-		PGA1_c34410	0.61	-0.5
3,609,024	-		PGA1_c34410	0.61	+0.3
3,609,026	+		PGA1_c34410	0.62	+0.4
3,609,137	+		PGA1_c34410	0.77	-0.9
3,609,237	+				+0.8
3,609,309	-				-0.5
3,609,316	+				-0.5
3,609,345	+				-0.0
3,609,398	+				-0.3
3,609,413	-				+0.1
3,609,413	-				+0.4
3,609,453	-				-1.6
3,609,508	+				-1.0
3,609,545	+		PGA1_c34420	0.13	-1.0
3,609,550	+		PGA1_c34420	0.13	+1.5
3,609,550	+		PGA1_c34420	0.13	+0.9
3,609,550	+		PGA1_c34420	0.13	+0.1
3,609,558	-		PGA1_c34420	0.14	-1.9
3,609,558	-		PGA1_c34420	0.14	-2.6
3,609,558	-		PGA1_c34420	0.14	+0.5
3,609,575	+		PGA1_c34420	0.15	-0.3
3,609,583	-		PGA1_c34420	0.16	+0.6
3,609,692	+		PGA1_c34420	0.26	-0.8
3,609,712	+		PGA1_c34420	0.28	+0.1
3,609,712	+		PGA1_c34420	0.28	+0.3
3,609,716	+		PGA1_c34420	0.28	-0.0
3,609,719	+		PGA1_c34420	0.29	-0.9
3,609,802	-		PGA1_c34420	0.36	-1.0
3,609,802	-		PGA1_c34420	0.36	-1.5
3,609,815	+		PGA1_c34420	0.37	-0.6
3,609,829	-		PGA1_c34420	0.39	-1.0
3,609,830	-		PGA1_c34420	0.39	+0.1
3,609,860	+		PGA1_c34420	0.42	-2.3
3,609,860	+		PGA1_c34420	0.42	-2.0
3,609,868	-		PGA1_c34420	0.42	-0.1
3,609,973	+		PGA1_c34420	0.52	-0.1
3,610,000	-		PGA1_c34420	0.54	-0.4
3,610,002	+		PGA1_c34420	0.55	+0.4
3,610,002	+		PGA1_c34420	0.55	+0.1
3,610,002	+		PGA1_c34420	0.55	-1.9
3,610,008	+		PGA1_c34420	0.55	-1.0
3,610,008	+		PGA1_c34420	0.55	+0.8
3,610,010	-		PGA1_c34420	0.55	+0.9
3,610,010	-		PGA1_c34420	0.55	+0.3
3,610,010	-		PGA1_c34420	0.55	+1.4
3,610,010	-		PGA1_c34420	0.55	-0.6
3,610,010	-		PGA1_c34420	0.55	+0.4
3,610,015	-		PGA1_c34420	0.56	+0.8
3,610,015	-		PGA1_c34420	0.56	-0.7
3,610,020	+		PGA1_c34420	0.56	-0.2
3,610,058	+		PGA1_c34420	0.60	-0.1
3,610,076	-		PGA1_c34420	0.61	+0.5
3,610,095	-		PGA1_c34420	0.63	-1.1
3,610,115	-		PGA1_c34420	0.65	-0.9
3,610,125	-		PGA1_c34420	0.66	+0.3
3,610,150	-		PGA1_c34420	0.68	-0.3
3,610,150	-		PGA1_c34420	0.68	+0.3
3,610,303	+		PGA1_c34420	0.82	-0.8