Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33220

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
3,480,680	-		PGA1_c33210	0.43	-1.3
3,480,699	+		PGA1_c33210	0.44	-0.5
3,480,699	+		PGA1_c33210	0.44	-0.2
3,480,699	+		PGA1_c33210	0.44	-0.1
3,480,699	+		PGA1_c33210	0.44	+0.9
3,480,707	-		PGA1_c33210	0.44	-0.2
3,480,707	-		PGA1_c33210	0.44	-1.8
3,480,709	+		PGA1_c33210	0.45	+1.0
3,480,718	-		PGA1_c33210	0.45	-0.4
3,480,734	-		PGA1_c33210	0.46	+0.5
3,480,785	+		PGA1_c33210	0.49	-1.3
3,480,785	+		PGA1_c33210	0.49	-0.5
3,480,842	-		PGA1_c33210	0.53	+0.3
3,480,853	-		PGA1_c33210	0.54	+0.1
3,480,855	+		PGA1_c33210	0.54	-1.5
3,480,863	-		PGA1_c33210	0.54	-0.2
3,480,863	-		PGA1_c33210	0.54	+1.0
3,480,863	-		PGA1_c33210	0.54	+1.6
3,480,885	+		PGA1_c33210	0.56	+1.3
3,480,885	+		PGA1_c33210	0.56	-0.3
3,480,890	+		PGA1_c33210	0.56	-0.2
3,480,893	-		PGA1_c33210	0.56	+0.7
3,480,893	-		PGA1_c33210	0.56	+1.2
3,481,013	+		PGA1_c33210	0.64	-0.6
3,481,013	+		PGA1_c33210	0.64	+0.5
3,481,013	+		PGA1_c33210	0.64	+0.3
3,481,015	+		PGA1_c33210	0.64	+1.0
3,481,021	-		PGA1_c33210	0.64	+0.1
3,481,021	-		PGA1_c33210	0.64	-0.2
3,481,021	-		PGA1_c33210	0.64	+0.3
3,481,021	-		PGA1_c33210	0.64	-0.4
3,481,021	-		PGA1_c33210	0.64	-1.3
3,481,021	-		PGA1_c33210	0.64	+0.6
3,481,071	+		PGA1_c33210	0.68	-1.4
3,481,082	-		PGA1_c33210	0.68	-0.7
3,481,082	-		PGA1_c33210	0.68	+0.5
3,481,158	+		PGA1_c33210	0.73	-0.3
3,481,166	-		PGA1_c33210	0.74	+0.8
3,481,178	+		PGA1_c33210	0.74	+1.0
3,481,178	+		PGA1_c33210	0.74	+0.5
3,481,179	-		PGA1_c33210	0.74	+0.1
3,481,188	+		PGA1_c33210	0.75	+0.5
3,481,194	+		PGA1_c33210	0.75	-0.0
3,481,233	-		PGA1_c33210	0.78	-0.2
3,481,249	-		PGA1_c33210	0.79	+0.8
3,481,270	+		PGA1_c33210	0.80	+1.1
3,481,305	+		PGA1_c33210	0.82	-2.2
3,481,386	-		PGA1_c33210	0.88	-0.5
3,481,393	-		PGA1_c33210	0.88	-1.9
3,481,404	+		PGA1_c33210	0.89	-0.1
3,481,404	+		PGA1_c33210	0.89	-0.9
3,481,412	-		PGA1_c33210	0.89	+0.9
3,481,412	-		PGA1_c33210	0.89	-1.8
3,481,420	+		PGA1_c33210	0.90	+0.5
3,481,421	+		PGA1_c33210	0.90	-2.3
3,481,428	-				-0.2
3,481,439	+				-0.9
3,481,507	+				-1.3
3,481,507	+				+0.1
3,481,575	+				-0.2
3,481,575	+				+1.2
3,481,583	-				+1.3
3,481,593	-				+1.0
3,481,631	+				+0.2
3,481,665	+				-0.9
3,481,672	+				+0.4
3,481,677	+				-0.5
3,481,689	+				-1.1
3,481,702	-				-0.8
3,481,744	-		PGA1_c33220	0.21	-0.0
3,481,749	-		PGA1_c33220	0.23	+0.5
3,481,792	-		PGA1_c33220	0.36	+1.8
3,481,799	-		PGA1_c33220	0.38	+0.4
3,481,804	+		PGA1_c33220	0.40	+0.5
3,481,888	-		PGA1_c33220	0.65	+0.9
3,481,888	-		PGA1_c33220	0.65	+2.0
3,481,897	+		PGA1_c33220	0.68	-0.0
3,481,905	-		PGA1_c33220	0.71	+1.1
3,481,965	-		PGA1_c33220	0.89	+0.3
3,482,039	+				-1.0
3,482,071	-				-1.0
3,482,083	+				-0.3
3,482,094	-				-0.4
3,482,123	+				-0.4
3,482,133	+				-1.0
3,482,133	+				+0.4
3,482,168	+				+0.7
3,482,168	+				+0.6
3,482,168	+				-0.7
3,482,168	+				-1.5
3,482,168	+				+1.2
3,482,176	-				-0.7
3,482,176	-				-0.2
3,482,176	-				+0.4
3,482,176	-				+0.3
3,482,176	-				-0.4
3,482,178	+				-0.1
3,482,186	+				-0.5
3,482,381	+		PGA1_c33230	0.14	+0.2
3,482,385	+		PGA1_c33230	0.15	+1.8
3,482,385	+		PGA1_c33230	0.15	+0.3
3,482,385	+		PGA1_c33230	0.15	-0.1
3,482,393	-		PGA1_c33230	0.16	+0.5
3,482,402	+		PGA1_c33230	0.17	-2.9
3,482,408	-		PGA1_c33230	0.17	+0.1
3,482,415	+		PGA1_c33230	0.18	-1.0
3,482,431	+		PGA1_c33230	0.20	-0.1
3,482,437	+		PGA1_c33230	0.20	+0.3
3,482,491	+		PGA1_c33230	0.26	+0.8
3,482,513	+		PGA1_c33230	0.29	+0.2
3,482,522	+		PGA1_c33230	0.29	-1.2
3,482,547	+		PGA1_c33230	0.32	+0.1
3,482,560	-		PGA1_c33230	0.34	+0.1
3,482,594	-		PGA1_c33230	0.37	-0.5
3,482,594	-		PGA1_c33230	0.37	-2.2
3,482,594	-		PGA1_c33230	0.37	-0.8
3,482,636	+		PGA1_c33230	0.42	-1.3
3,482,692	-		PGA1_c33230	0.48	+1.1
3,482,725	+		PGA1_c33230	0.51	-0.7
3,482,768	+		PGA1_c33230	0.56	+1.3
3,482,826	-		PGA1_c33230	0.62	-1.3
3,482,830	+		PGA1_c33230	0.62	-3.0
3,482,869	+		PGA1_c33230	0.67	+0.2
3,482,995	+		PGA1_c33230	0.80	+1.1