Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32090

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
3,363,625	+		PGA1_c32080	0.13	+0.6
3,363,645	-		PGA1_c32080	0.15	+0.9
3,363,645	-		PGA1_c32080	0.15	-0.3
3,363,645	-		PGA1_c32080	0.15	-2.2
3,363,645	-		PGA1_c32080	0.15	+0.0
3,363,658	+		PGA1_c32080	0.16	-0.0
3,363,680	-		PGA1_c32080	0.18	+1.0
3,363,741	+		PGA1_c32080	0.25	-0.0
3,363,742	+		PGA1_c32080	0.25	+0.2
3,363,742	+		PGA1_c32080	0.25	-0.3
3,363,750	-		PGA1_c32080	0.26	+0.2
3,363,750	-		PGA1_c32080	0.26	+0.6
3,363,795	-		PGA1_c32080	0.30	+0.6
3,363,795	-		PGA1_c32080	0.30	-0.4
3,363,819	+		PGA1_c32080	0.33	-0.6
3,363,827	-		PGA1_c32080	0.34	-1.3
3,363,913	-		PGA1_c32080	0.43	+0.1
3,363,967	-		PGA1_c32080	0.49	+0.1
3,363,995	-		PGA1_c32080	0.52	+1.2
3,364,001	-		PGA1_c32080	0.52	+1.6
3,364,044	+		PGA1_c32080	0.57	+1.2
3,364,044	+		PGA1_c32080	0.57	+0.1
3,364,044	+		PGA1_c32080	0.57	+1.2
3,364,044	+		PGA1_c32080	0.57	+0.6
3,364,044	+		PGA1_c32080	0.57	+0.6
3,364,052	-		PGA1_c32080	0.58	-0.2
3,364,052	-		PGA1_c32080	0.58	+0.3
3,364,052	-		PGA1_c32080	0.58	+0.3
3,364,052	-		PGA1_c32080	0.58	-2.3
3,364,052	-		PGA1_c32080	0.58	+1.2
3,364,052	-		PGA1_c32080	0.58	+0.9
3,364,052	-		PGA1_c32080	0.58	+1.4
3,364,052	-		PGA1_c32080	0.58	+0.6
3,364,052	-		PGA1_c32080	0.58	+1.2
3,364,052	-		PGA1_c32080	0.58	-0.1
3,364,052	-		PGA1_c32080	0.58	-0.5
3,364,163	+		PGA1_c32080	0.69	-1.0
3,364,164	+		PGA1_c32080	0.69	+1.4
3,364,172	-		PGA1_c32080	0.70	+0.4
3,364,172	-		PGA1_c32080	0.70	+1.3
3,364,208	-		PGA1_c32080	0.74	+1.2
3,364,280	-		PGA1_c32080	0.82	-0.1
3,364,284	+		PGA1_c32080	0.82	-0.6
3,364,292	-		PGA1_c32080	0.83	-1.8
3,364,294	+		PGA1_c32080	0.83	+2.6
3,364,406	+				+0.1
3,364,413	+				+0.8
3,364,413	+				+0.3
3,364,414	-				-0.5
3,364,421	-				+0.9
3,364,428	+				-1.1
3,364,428	+				+0.7
3,364,436	-				+1.1
3,364,470	+				-1.6
3,364,473	-				-0.6
3,364,494	+				+0.3
3,364,541	-				+0.5
3,364,541	-				+0.1
3,364,558	-				+1.6
3,364,601	+				+0.0
3,364,601	+				+0.6
3,364,609	-		PGA1_c32090	0.11	+0.6
3,364,629	-		PGA1_c32090	0.13	+0.3
3,364,652	+		PGA1_c32090	0.16	+1.4
3,364,653	+		PGA1_c32090	0.16	+2.1
3,364,660	-		PGA1_c32090	0.17	-0.1
3,364,668	+		PGA1_c32090	0.18	+0.3
3,364,730	-		PGA1_c32090	0.25	+0.0
3,364,764	+		PGA1_c32090	0.30	+1.0
3,364,766	-		PGA1_c32090	0.30	+0.9
3,364,766	-		PGA1_c32090	0.30	-0.3
3,364,775	+		PGA1_c32090	0.31	+0.9
3,364,783	-		PGA1_c32090	0.32	+0.6
3,364,823	+		PGA1_c32090	0.37	+0.3
3,364,823	+		PGA1_c32090	0.37	+0.1
3,364,824	+		PGA1_c32090	0.37	+1.1
3,364,836	+		PGA1_c32090	0.38	+2.1
3,364,846	+		PGA1_c32090	0.40	+1.0
3,364,846	+		PGA1_c32090	0.40	+0.2
3,364,887	-		PGA1_c32090	0.45	-1.1
3,364,965	+		PGA1_c32090	0.54	+0.3
3,365,024	+		PGA1_c32090	0.61	+1.7
3,365,032	-		PGA1_c32090	0.62	+0.3
3,365,105	-		PGA1_c32090	0.71	+0.4
3,365,222	-		PGA1_c32090	0.86	+0.4
3,365,222	-		PGA1_c32090	0.86	-0.3
3,365,375	-				+0.0
3,365,377	-				+0.4
3,365,409	+				+1.2
3,365,527	-		PGA1_c32100	0.12	+0.6
3,365,541	-		PGA1_c32100	0.13	+0.0
3,365,627	+		PGA1_c32100	0.18	+0.5
3,365,632	+		PGA1_c32100	0.18	+1.1
3,365,637	+		PGA1_c32100	0.19	+1.7
3,365,691	+		PGA1_c32100	0.22	-0.5
3,365,762	+		PGA1_c32100	0.27	+0.4
3,365,779	-		PGA1_c32100	0.28	+1.3
3,365,789	-		PGA1_c32100	0.28	-0.6
3,365,817	+		PGA1_c32100	0.30	-1.7
3,365,817	+		PGA1_c32100	0.30	+0.5
3,365,841	+		PGA1_c32100	0.31	+1.2
3,365,849	-		PGA1_c32100	0.32	-0.6
3,365,849	-		PGA1_c32100	0.32	-2.6
3,365,851	+		PGA1_c32100	0.32	-0.9
3,365,879	-		PGA1_c32100	0.34	+0.7
3,365,922	+		PGA1_c32100	0.37	+0.9
3,365,959	-		PGA1_c32100	0.39	+0.8
3,365,959	-		PGA1_c32100	0.39	+0.2
3,365,995	-		PGA1_c32100	0.41	+1.2
3,366,029	+		PGA1_c32100	0.43	-0.8
3,366,034	+		PGA1_c32100	0.43	-0.5
3,366,039	+		PGA1_c32100	0.44	+0.3
3,366,060	+		PGA1_c32100	0.45	+0.7
3,366,093	+		PGA1_c32100	0.47	-0.1
3,366,101	-		PGA1_c32100	0.48	+0.6
3,366,102	-		PGA1_c32100	0.48	+0.3
3,366,143	-		PGA1_c32100	0.50	+0.4
3,366,152	-		PGA1_c32100	0.51	+1.4
3,366,154	-		PGA1_c32100	0.51	-1.8
3,366,211	+		PGA1_c32100	0.54	+1.1
3,366,211	+		PGA1_c32100	0.54	+0.5
3,366,211	+		PGA1_c32100	0.54	-0.2
3,366,249	+		PGA1_c32100	0.57	+0.4