Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27250

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
2,838,352	-		PGA1_c27230	0.85	+2.4
2,838,352	-		PGA1_c27230	0.85	-0.1
2,838,375	+		PGA1_c27230	0.88	+0.1
2,838,375	+		PGA1_c27230	0.88	+0.7
2,838,375	+		PGA1_c27230	0.88	+0.6
2,838,383	-		PGA1_c27230	0.89	-0.1
2,838,383	-		PGA1_c27230	0.89	-1.3
2,838,393	-				-0.3
2,838,465	+				-0.3
2,838,729	+		PGA1_c27240	0.35	-0.7
2,838,765	-		PGA1_c27240	0.44	+0.3
2,838,791	-		PGA1_c27240	0.51	+1.2
2,838,942	+				-0.7
2,838,976	+				-1.1
2,838,976	+				-1.5
2,838,983	+				+1.2
2,838,992	-				-1.4
2,839,018	+				-2.5
2,839,018	+				-0.2
2,839,115	-				-1.4
2,839,196	+				+0.1
2,839,196	+				+0.4
2,839,196	+				-0.7
2,839,196	+				-0.5
2,839,196	+				-0.6
2,839,196	+				-0.9
2,839,204	-				-0.2
2,839,204	-				+0.2
2,839,204	-				-0.6
2,839,217	+				-0.6
2,839,218	-				-0.2
2,839,227	-				-0.7
2,839,237	-				-0.6
2,839,291	-				+0.1
2,839,306	+				+1.3
2,839,311	+				+1.6
2,839,314	-				-0.7
2,839,319	-				+0.0
2,839,319	-				-0.9
2,839,319	-				-0.0
2,839,319	-				+0.4
2,839,346	-				-0.8
2,839,346	-				+1.4
2,839,356	-				+0.9
2,839,368	+				-0.5
2,839,429	-		PGA1_c27250	0.18	+0.0
2,839,437	+		PGA1_c27250	0.19	+0.5
2,839,439	+		PGA1_c27250	0.19	-0.3
2,839,447	+		PGA1_c27250	0.21	-0.6
2,839,447	+		PGA1_c27250	0.21	-0.5
2,839,544	-		PGA1_c27250	0.35	+0.4
2,839,664	-		PGA1_c27250	0.52	+2.0
2,839,669	+		PGA1_c27250	0.53	+0.4
2,839,757	+		PGA1_c27250	0.65	-0.5
2,839,778	+		PGA1_c27250	0.68	+1.0
2,839,804	-		PGA1_c27250	0.72	+0.6
2,839,809	-		PGA1_c27250	0.73	+0.7
2,839,869	+		PGA1_c27250	0.82	-0.8
2,839,875	+		PGA1_c27250	0.82	+0.5
2,839,877	-		PGA1_c27250	0.83	-1.0
2,839,877	-		PGA1_c27250	0.83	+1.3
2,839,934	-				-0.6
2,839,952	-				-1.0
2,839,990	+				+0.5
2,839,990	+				-1.3
2,839,998	-				+0.1
2,839,998	-				+0.3
2,839,998	-				-0.3
2,839,998	-				-0.4
2,839,998	-				-1.2
2,840,006	+				-0.1
2,840,006	+				-0.5
2,840,006	+				-0.4
2,840,006	+				-0.7
2,840,014	-				+0.2
2,840,014	-				-1.3
2,840,090	-		PGA1_c27260	0.10	-0.4
2,840,113	+		PGA1_c27260	0.13	-1.0
2,840,121	-		PGA1_c27260	0.14	-0.3
2,840,121	-		PGA1_c27260	0.14	+0.5
2,840,138	+		PGA1_c27260	0.17	-0.5
2,840,138	+		PGA1_c27260	0.17	+0.8
2,840,146	-		PGA1_c27260	0.18	-1.2
2,840,146	-		PGA1_c27260	0.18	+0.4
2,840,248	+		PGA1_c27260	0.32	-0.9
2,840,273	+		PGA1_c27260	0.35	-0.2
2,840,278	-		PGA1_c27260	0.36	+0.8
2,840,281	-		PGA1_c27260	0.37	+0.3
2,840,306	-		PGA1_c27260	0.40	-0.6
2,840,324	-		PGA1_c27260	0.42	+0.2
2,840,327	+		PGA1_c27260	0.43	+0.0
2,840,414	+		PGA1_c27260	0.55	-1.2
2,840,503	+		PGA1_c27260	0.67	-0.4
2,840,573	-		PGA1_c27260	0.77	+0.1
2,840,591	+		PGA1_c27260	0.80	-1.0
2,840,599	-		PGA1_c27260	0.81	-1.0
2,840,635	+		PGA1_c27260	0.86	-1.6
2,840,635	+		PGA1_c27260	0.86	-1.3
2,840,635	+		PGA1_c27260	0.86	+1.1
2,840,643	-		PGA1_c27260	0.87	+0.3
2,840,643	-		PGA1_c27260	0.87	+1.1
2,840,643	-		PGA1_c27260	0.87	-2.7
2,840,643	-		PGA1_c27260	0.87	-0.2
2,840,643	-		PGA1_c27260	0.87	-1.6
2,840,661	+		PGA1_c27260	0.89	-3.2
2,840,663	+		PGA1_c27260	0.90	+0.3
2,840,708	-				-1.0
2,840,716	+				+0.0
2,840,718	-				-0.0
2,840,770	+				+0.6
2,840,772	-				+0.8
2,840,773	-				-1.0
2,840,804	+				-0.4
2,840,832	-				-0.2
2,840,882	-		PGA1_c27270	0.11	-0.9
2,840,900	+		PGA1_c27270	0.12	-0.5
2,840,969	+		PGA1_c27270	0.17	-0.1
2,840,984	-		PGA1_c27270	0.18	-0.5
2,840,984	-		PGA1_c27270	0.18	-1.3
2,840,984	-		PGA1_c27270	0.18	-0.0
2,840,986	+		PGA1_c27270	0.19	-0.1
2,840,994	-		PGA1_c27270	0.19	-0.6
2,840,994	-		PGA1_c27270	0.19	-1.9