Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25920

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
2,700,363	+				-1.0
2,700,384	+				-0.3
2,700,391	+				-0.6
2,700,397	-				-1.2
2,700,399	-				+0.4
2,700,435	+		PGA1_c25910	0.10	-1.4
2,700,443	-		PGA1_c25910	0.11	+0.3
2,700,444	-		PGA1_c25910	0.11	-0.7
2,700,444	-		PGA1_c25910	0.11	-1.2
2,700,483	+		PGA1_c25910	0.15	+0.7
2,700,490	-		PGA1_c25910	0.16	+0.1
2,700,557	+		PGA1_c25910	0.22	+0.8
2,700,573	+		PGA1_c25910	0.24	-0.2
2,700,587	+		PGA1_c25910	0.25	+0.3
2,700,623	+		PGA1_c25910	0.29	-0.3
2,700,628	+		PGA1_c25910	0.29	+0.9
2,700,628	+		PGA1_c25910	0.29	+0.7
2,700,628	+		PGA1_c25910	0.29	-0.3
2,700,628	+		PGA1_c25910	0.29	+1.8
2,700,628	+		PGA1_c25910	0.29	-0.2
2,700,636	-		PGA1_c25910	0.30	-0.0
2,700,636	-		PGA1_c25910	0.30	+0.5
2,700,636	-		PGA1_c25910	0.30	-0.3
2,700,636	-		PGA1_c25910	0.30	+0.5
2,700,687	-		PGA1_c25910	0.35	-0.7
2,700,702	+		PGA1_c25910	0.37	+0.8
2,700,710	-		PGA1_c25910	0.37	-0.4
2,700,731	+		PGA1_c25910	0.39	-0.7
2,700,761	-		PGA1_c25910	0.42	+0.4
2,700,800	-		PGA1_c25910	0.46	+0.5
2,700,809	+		PGA1_c25910	0.47	-0.3
2,700,814	+		PGA1_c25910	0.48	+1.5
2,700,814	+		PGA1_c25910	0.48	+0.6
2,700,899	-		PGA1_c25910	0.56	+0.1
2,700,925	+		PGA1_c25910	0.59	-1.6
2,700,933	-		PGA1_c25910	0.59	-0.3
2,700,935	+		PGA1_c25910	0.59	+1.5
2,700,935	+		PGA1_c25910	0.59	+1.4
2,700,935	+		PGA1_c25910	0.59	-0.6
2,700,935	+		PGA1_c25910	0.59	-0.5
2,700,935	+		PGA1_c25910	0.59	+0.4
2,700,940	+		PGA1_c25910	0.60	-0.4
2,700,943	-		PGA1_c25910	0.60	+0.2
2,700,943	-		PGA1_c25910	0.60	-0.2
2,700,943	-		PGA1_c25910	0.60	+0.3
2,700,943	-		PGA1_c25910	0.60	-0.0
2,700,959	+		PGA1_c25910	0.62	+0.4
2,701,001	+		PGA1_c25910	0.66	+0.1
2,701,009	-		PGA1_c25910	0.67	-0.2
2,701,016	+		PGA1_c25910	0.67	+0.4
2,701,017	-		PGA1_c25910	0.68	-1.5
2,701,017	-		PGA1_c25910	0.68	-0.5
2,701,024	-		PGA1_c25910	0.68	+0.4
2,701,024	-		PGA1_c25910	0.68	+0.9
2,701,113	+		PGA1_c25910	0.77	+0.4
2,701,299	+				-0.5
2,701,313	+				+1.2
2,701,316	-				-0.0
2,701,317	-				+1.0
2,701,403	+				-0.4
2,701,447	-		PGA1_c25920	0.13	+0.2
2,701,515	-		PGA1_c25920	0.22	+1.3
2,701,543	-		PGA1_c25920	0.25	+0.6
2,701,662	+		PGA1_c25920	0.40	+1.2
2,701,689	+		PGA1_c25920	0.44	-0.5
2,701,745	+		PGA1_c25920	0.51	-1.0
2,701,817	+		PGA1_c25920	0.60	+1.7
2,701,888	+		PGA1_c25920	0.69	+1.6
2,701,906	+		PGA1_c25920	0.72	+0.8
2,701,967	+		PGA1_c25920	0.79	+1.4
2,702,016	-		PGA1_c25920	0.86	+1.1
2,702,050	+				+0.1
2,702,066	+				+0.3
2,702,071	+				+0.4
2,702,079	-				-0.9
2,702,114	-				-1.1
2,702,174	+				+0.9
2,702,174	+				+0.1
2,702,182	-				-0.6
2,702,287	+		PGA1_c25930	0.14	+0.4
2,702,287	-		PGA1_c25930	0.14	-0.9
2,702,294	+		PGA1_c25930	0.15	+0.7
2,702,307	-		PGA1_c25930	0.16	+0.7
2,702,322	+		PGA1_c25930	0.17	-0.9
2,702,330	-		PGA1_c25930	0.18	+0.6
2,702,330	-		PGA1_c25930	0.18	+0.1
2,702,356	-		PGA1_c25930	0.21	+0.2
2,702,424	+		PGA1_c25930	0.27	-1.2
2,702,424	+		PGA1_c25930	0.27	+0.1
2,702,424	+		PGA1_c25930	0.27	-1.2
2,702,432	-		PGA1_c25930	0.28	-1.3
2,702,432	-		PGA1_c25930	0.28	-0.4
2,702,432	-		PGA1_c25930	0.28	+0.4
2,702,432	-		PGA1_c25930	0.28	+0.1
2,702,432	-		PGA1_c25930	0.28	-1.9
2,702,432	-		PGA1_c25930	0.28	+0.0
2,702,432	-		PGA1_c25930	0.28	+0.2
2,702,469	+		PGA1_c25930	0.31	-0.6
2,702,561	+		PGA1_c25930	0.40	+1.1
2,702,561	+		PGA1_c25930	0.40	-0.3
2,702,569	-		PGA1_c25930	0.41	+0.1
2,702,636	-		PGA1_c25930	0.47	+0.0
2,702,655	+		PGA1_c25930	0.49	+1.3
2,702,661	+		PGA1_c25930	0.49	-0.2
2,702,685	-		PGA1_c25930	0.52	+0.3
2,702,685	-		PGA1_c25930	0.52	+0.1
2,702,685	-		PGA1_c25930	0.52	-1.4
2,702,692	+		PGA1_c25930	0.52	-0.5
2,702,692	+		PGA1_c25930	0.52	-0.3
2,702,692	+		PGA1_c25930	0.52	+0.2
2,702,699	-		PGA1_c25930	0.53	-0.5
2,702,700	-		PGA1_c25930	0.53	-0.4
2,702,743	-		PGA1_c25930	0.57	-0.6
2,702,798	+				+0.2
2,703,017	+		PGA1_c25930	0.83	+0.8
2,703,017	+		PGA1_c25930	0.83	-2.3
2,703,025	-		PGA1_c25930	0.84	-0.3
2,703,026	+		PGA1_c25930	0.84	+0.9
2,703,128	+				-0.0