Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23880

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
2,491,076	-		PGA1_c23860	0.47	-1.0
2,491,093	-		PGA1_c23860	0.52	+1.0
2,491,093	-		PGA1_c23860	0.52	-1.8
2,491,094	-		PGA1_c23860	0.52	-2.9
2,491,182	-		PGA1_c23860	0.77	-0.2
2,491,186	+		PGA1_c23860	0.78	+1.1
2,491,198	+		PGA1_c23860	0.81	+0.1
2,491,203	+		PGA1_c23860	0.83	+0.2
2,491,203	+		PGA1_c23860	0.83	-2.4
2,491,211	-		PGA1_c23860	0.85	-0.6
2,491,211	-		PGA1_c23860	0.85	+0.3
2,491,211	-		PGA1_c23860	0.85	-1.0
2,491,221	-		PGA1_c23860	0.88	-0.4
2,491,269	+				-0.2
2,491,269	+				+0.9
2,491,380	+		PGA1_c23870	0.17	+0.0
2,491,380	+		PGA1_c23870	0.17	-0.5
2,491,388	-		PGA1_c23870	0.18	-1.1
2,491,388	-		PGA1_c23870	0.18	-0.1
2,491,388	-		PGA1_c23870	0.18	+1.2
2,491,388	-		PGA1_c23870	0.18	+1.0
2,491,389	-		PGA1_c23870	0.18	-0.4
2,491,392	+		PGA1_c23870	0.18	+1.2
2,491,481	-		PGA1_c23870	0.31	+0.3
2,491,484	+		PGA1_c23870	0.31	-1.6
2,491,704	+		PGA1_c23870	0.62	-0.6
2,491,722	-		PGA1_c23870	0.64	-0.5
2,491,873	-		PGA1_c23870	0.85	+0.1
2,491,920	+				-0.6
2,491,928	-				-0.9
2,491,969	-				-2.1
2,492,063	+		PGA1_c23880	0.13	+0.9
2,492,081	+		PGA1_c23880	0.15	+0.8
2,492,089	-		PGA1_c23880	0.16	-0.0
2,492,089	-		PGA1_c23880	0.16	-1.2
2,492,128	-		PGA1_c23880	0.22	+1.3
2,492,133	-		PGA1_c23880	0.23	+0.5
2,492,185	+		PGA1_c23880	0.30	-1.2
2,492,247	-		PGA1_c23880	0.39	+0.4
2,492,271	-		PGA1_c23880	0.42	-0.1
2,492,290	+		PGA1_c23880	0.45	+0.9
2,492,290	+		PGA1_c23880	0.45	+0.7
2,492,309	+		PGA1_c23880	0.48	-0.8
2,492,495	-		PGA1_c23880	0.75	+1.0
2,492,495	-		PGA1_c23880	0.75	-1.2
2,492,529	-		PGA1_c23880	0.79	-0.3
2,492,539	+		PGA1_c23880	0.81	+0.6
2,492,618	-				-0.5
2,492,618	-				+1.8
2,492,618	-				+0.4
2,492,625	+				+0.4
2,492,646	+				-0.6
2,492,654	-				+0.3
2,492,667	-				-2.4
2,492,681	+				-1.1
2,492,689	-				-0.2
2,492,693	+				+0.5
2,492,702	-				-0.2
2,492,720	-				-0.1
2,492,737	+				+0.4
2,492,737	+				+0.1
2,492,765	-				+0.2
2,492,765	-				+0.7
2,492,765	-				+0.7
2,492,905	-		PGA1_c23890	0.12	-0.5
2,492,905	-		PGA1_c23890	0.12	-2.4
2,493,272	+				-0.5
2,493,277	+				-0.7