Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23720

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
2,474,484	-		PGA1_c23710	0.20	-1.5
2,474,912	-		PGA1_c23710	0.57	-2.0
2,474,917	+		PGA1_c23710	0.58	-0.3
2,474,965	+		PGA1_c23710	0.62	-1.5
2,474,973	-		PGA1_c23710	0.62	-0.3
2,474,973	-		PGA1_c23710	0.62	-0.8
2,474,973	-		PGA1_c23710	0.62	-0.5
2,475,263	-		PGA1_c23710	0.88	-3.2
2,475,343	-				-1.9
2,475,447	+				-1.6
2,475,455	-				+0.0
2,475,495	-				+0.6
2,475,498	-				-0.5
2,475,512	-				+0.3
2,475,514	+				+0.7
2,475,726	-		PGA1_c23720	0.18	+0.5
2,475,949	-		PGA1_c23720	0.35	+0.6
2,476,015	+		PGA1_c23720	0.40	+0.5
2,476,261	+		PGA1_c23720	0.58	+1.4
2,476,498	+		PGA1_c23720	0.75	+0.4
2,476,631	-		PGA1_c23720	0.85	+0.4
2,476,862	+				-0.8
2,476,862	+				+1.1
2,476,862	+				+1.0
2,476,862	+				-0.3
2,476,862	+				-0.4
2,476,862	+				+0.0
2,476,867	+				+0.4
2,476,870	-				-1.0
2,476,870	-				+2.9
2,476,870	-				-0.0
2,476,872	+				-1.0
2,476,880	-				+1.3
2,476,997	-				+1.6
2,477,000	+				-0.2
2,477,000	+				-0.3
2,477,000	+				-1.1
2,477,002	-				-0.7
2,477,008	-				-0.6
2,477,010	+				-0.3
2,477,010	+				-0.7
2,477,018	-				-0.2
2,477,217	-		PGA1_c23730	0.49	+0.4
2,477,217	-		PGA1_c23730	0.49	-0.3
2,477,217	-		PGA1_c23730	0.49	+0.3
2,477,298	+		PGA1_c23730	0.67	+0.1
2,477,298	+		PGA1_c23730	0.67	+0.0
2,477,306	-		PGA1_c23730	0.68	-0.4
2,477,335	+		PGA1_c23730	0.75	-0.0
2,477,487	-				-1.8
2,477,512	+				+0.3
2,477,512	+				+1.1
2,477,512	+				-1.3
2,477,512	+				+0.3
2,477,520	-				+0.2
2,477,520	-				+0.0
2,477,520	-				+0.3
2,477,540	+				+1.9
2,477,548	-				+0.7
2,477,596	-				+0.1
2,477,597	-				-0.2
2,477,613	-		PGA1_c23740	0.10	-0.5
2,477,620	+		PGA1_c23740	0.11	-0.0
2,477,655	-		PGA1_c23740	0.15	+0.9
2,477,691	+		PGA1_c23740	0.20	-0.1
2,477,786	-		PGA1_c23740	0.32	-0.2