Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20220

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
2,098,147	+		PGA1_c20210	0.62	-0.1
2,098,258	+		PGA1_c20210	0.68	+0.5
2,098,350	+		PGA1_c20210	0.74	+1.2
2,098,551	+		PGA1_c20210	0.85	+0.8
2,098,603	+		PGA1_c20210	0.88	+0.5
2,098,628	+		PGA1_c20210	0.90	+0.8
2,098,628	+		PGA1_c20210	0.90	+0.5
2,098,636	-				-0.5
2,098,804	+				-1.6
2,098,804	+				-0.1
2,098,804	+				+0.0
2,098,804	+				-0.1
2,098,812	-				-1.5
2,098,835	-				-0.6
2,098,879	-				-0.0
2,098,891	-				+0.3
2,098,958	+		PGA1_c20220	0.14	-0.5
2,098,966	-		PGA1_c20220	0.16	-0.3
2,099,005	-		PGA1_c20220	0.23	-1.2
2,099,049	+		PGA1_c20220	0.31	-1.3
2,099,123	-		PGA1_c20220	0.44	-2.4
2,099,123	-		PGA1_c20220	0.44	+0.9
2,099,132	-		PGA1_c20220	0.45	+0.2
2,099,134	+		PGA1_c20220	0.46	-1.7
2,099,142	-		PGA1_c20220	0.47	-0.3
2,099,181	+		PGA1_c20220	0.54	-1.1
2,099,199	+		PGA1_c20220	0.57	-0.5
2,099,379	+		PGA1_c20220	0.89	+1.1
2,099,422	+				+1.0
2,099,436	+				-0.6
2,099,457	+				+0.5
2,099,492	+				-2.1
2,099,492	+				-2.5
2,099,517	-				-1.8
2,099,603	-				-0.5
2,099,673	-		PGA1_c20230	0.22	+1.1
2,099,687	+		PGA1_c20230	0.25	-0.3
2,099,721	+		PGA1_c20230	0.32	-0.2
2,099,812	+		PGA1_c20230	0.51	+0.5
2,099,812	+		PGA1_c20230	0.51	-0.2
2,099,820	-		PGA1_c20230	0.53	-0.1
2,099,820	-		PGA1_c20230	0.53	+1.1
2,099,846	+		PGA1_c20230	0.58	-0.4
2,099,875	-		PGA1_c20230	0.64	-0.2
2,099,923	+		PGA1_c20230	0.74	+0.2
2,099,945	+		PGA1_c20230	0.79	+0.3
2,099,970	+		PGA1_c20230	0.84	+1.7
2,099,978	-		PGA1_c20230	0.86	+0.8
2,099,992	+		PGA1_c20230	0.88	-0.8
2,100,022	-				+0.2
2,100,047	+				+0.3
2,100,059	+				-2.3
2,100,059	+				-0.6
2,100,059	+				-0.7
2,100,059	+				-1.1
2,100,059	+				+0.2
2,100,067	-				+1.9
2,100,067	-				-0.2
2,100,067	-				-0.5
2,100,258	-				-1.2
2,100,258	-				-0.8
2,100,282	-				+0.0
2,100,322	+				-0.2
2,100,349	-		PGA1_c20240	0.10	-1.5
2,100,384	+		PGA1_c20240	0.14	+0.5
2,100,409	-		PGA1_c20240	0.18	-0.1
2,100,414	-		PGA1_c20240	0.18	+0.4
2,100,414	-		PGA1_c20240	0.18	-1.4
2,100,420	+		PGA1_c20240	0.19	+1.2
2,100,435	-		PGA1_c20240	0.21	-0.7