Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19280

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
2,003,605	+		PGA1_c19270	0.83	+0.6
2,003,605	+		PGA1_c19270	0.83	+0.4
2,003,611	-		PGA1_c19270	0.83	-0.5
2,003,613	-		PGA1_c19270	0.84	+1.2
2,003,613	-		PGA1_c19270	0.84	-1.1
2,003,624	-		PGA1_c19270	0.84	+0.1
2,003,627	-		PGA1_c19270	0.84	-0.3
2,003,670	+		PGA1_c19270	0.85	+0.5
2,003,670	+		PGA1_c19270	0.85	+0.1
2,003,670	+		PGA1_c19270	0.85	-0.7
2,003,670	+		PGA1_c19270	0.85	-1.4
2,003,670	+		PGA1_c19270	0.85	-2.1
2,003,678	-		PGA1_c19270	0.85	+1.8
2,003,678	-		PGA1_c19270	0.85	+0.3
2,003,678	-		PGA1_c19270	0.85	+0.4
2,003,686	-		PGA1_c19270	0.85	-1.1
2,003,686	-		PGA1_c19270	0.85	+0.3
2,003,686	-		PGA1_c19270	0.85	-0.6
2,003,686	-		PGA1_c19270	0.85	+1.2
2,003,694	-		PGA1_c19270	0.85	-1.2
2,003,698	+		PGA1_c19270	0.85	+0.7
2,003,698	+		PGA1_c19270	0.85	+1.9
2,003,717	+		PGA1_c19270	0.86	-0.3
2,003,723	+		PGA1_c19270	0.86	-0.6
2,003,723	+		PGA1_c19270	0.86	+0.3
2,003,723	+		PGA1_c19270	0.86	-2.6
2,003,725	-		PGA1_c19270	0.86	+0.6
2,003,728	+		PGA1_c19270	0.86	+0.8
2,003,728	+		PGA1_c19270	0.86	+0.1
2,003,728	+		PGA1_c19270	0.86	-0.8
2,003,728	+		PGA1_c19270	0.86	+0.6
2,003,731	-		PGA1_c19270	0.86	-1.0
2,003,782	-		PGA1_c19270	0.87	-2.4
2,003,801	-		PGA1_c19270	0.87	-2.1
2,003,807	+		PGA1_c19270	0.87	+1.1
2,003,807	+		PGA1_c19270	0.87	-1.7
2,003,813	-		PGA1_c19270	0.87	+0.9
2,003,823	+		PGA1_c19270	0.88	-0.4
2,003,831	-		PGA1_c19270	0.88	-0.1
2,003,890	+		PGA1_c19270	0.89	+0.0
2,003,911	+		PGA1_c19270	0.89	+0.4
2,003,912	+		PGA1_c19270	0.89	-1.8
2,003,920	-		PGA1_c19270	0.89	+0.0
2,003,922	+		PGA1_c19270	0.89	-0.6
2,003,945	-		PGA1_c19270	0.90	-0.7
2,003,945	-		PGA1_c19270	0.90	+0.9
2,003,954	-				+2.2
2,003,963	+				-1.7
2,003,963	+				+0.6
2,003,963	+				+0.3
2,003,963	+				+1.4
2,003,964	+				-1.7
2,003,972	-				+0.4
2,003,973	-				-1.7
2,004,038	+				-1.7
2,004,072	+				+0.4
2,004,080	-				-0.6
2,004,110	+				-1.3
2,004,115	-				-0.7
2,004,115	-				+1.8
2,004,128	+				-1.8
2,004,134	+				+0.5
2,004,134	+				-0.3
2,004,136	-				+0.6
2,004,136	-				-1.4
2,004,136	-				-0.1
2,004,159	+				+0.0
2,004,166	+				-0.1
2,004,199	+				-0.4
2,004,199	+				+0.2
2,004,205	+				+0.9
2,004,207	-				-0.3
2,004,213	-				-2.3
2,004,213	-				-1.1
2,004,214	-				-0.4
2,004,262	+				-1.4
2,004,265	-				-0.6
2,004,267	+				+0.3
2,004,270	-				-1.0
2,004,280	-				-1.9
2,004,285	+				-0.5
2,004,285	+				-1.7
2,004,292	-				+0.4
2,004,292	-				-0.7
2,004,324	+				+0.9
2,004,375	-				-0.9
2,004,393	+				+2.4
2,004,393	+				+0.6
2,004,393	+				-1.4
2,004,393	+				+0.6
2,004,393	+				-0.3
2,004,393	+				+0.9
2,004,393	+				+1.3
2,004,393	+				+0.1
2,004,393	+				+0.3
2,004,393	+				-0.5
2,004,401	-				+0.7
2,004,401	-				-0.3
2,004,401	-				+0.4
2,004,401	-				+0.1
2,004,401	-				+2.0
2,004,411	-				+0.3
2,004,486	-				-1.2
2,004,509	+				-0.6
2,004,510	+				-0.7
2,004,515	+				-0.1
2,004,515	+				+1.2
2,004,515	+				+0.7
2,004,516	+				-0.0
2,004,516	+				+0.2
2,004,517	-				-0.4
2,004,517	-				+0.1
2,004,524	-				+1.8
2,004,524	-				-0.7
2,004,576	-				+0.7
2,004,584	-				-0.9
2,004,616	+				+0.4
2,004,616	+				-0.4
2,004,624	-				+0.1
2,004,671	+				-0.0
2,004,715	-		PGA1_c19280	0.11	+0.4
2,004,810	-		PGA1_c19280	0.20	+2.0
2,004,853	+		PGA1_c19280	0.25	-2.4
2,004,861	-		PGA1_c19280	0.25	+0.6
2,004,919	-		PGA1_c19280	0.31	+0.6
2,004,931	+		PGA1_c19280	0.32	-0.9
2,004,952	-		PGA1_c19280	0.34	+0.9
2,004,952	-		PGA1_c19280	0.34	-0.7
2,004,998	-		PGA1_c19280	0.39	-1.3
2,005,042	+		PGA1_c19280	0.43	+1.9
2,005,056	-		PGA1_c19280	0.44	-1.9
2,005,062	-		PGA1_c19280	0.45	-1.1
2,005,116	+		PGA1_c19280	0.50	-0.4
2,005,124	+		PGA1_c19280	0.51	-0.6
2,005,124	-		PGA1_c19280	0.51	+1.4
2,005,183	-		PGA1_c19280	0.56	-0.1
2,005,188	-		PGA1_c19280	0.57	-1.0
2,005,212	-		PGA1_c19280	0.59	+1.0
2,005,260	-		PGA1_c19280	0.64	+0.4
2,005,279	+		PGA1_c19280	0.65	-0.7
2,005,287	+		PGA1_c19280	0.66	+0.2
2,005,287	-		PGA1_c19280	0.66	-0.6
2,005,299	+		PGA1_c19280	0.67	-0.1
2,005,310	+		PGA1_c19280	0.68	+0.2
2,005,337	+		PGA1_c19280	0.71	-0.5
2,005,344	+		PGA1_c19280	0.72	-1.1
2,005,344	+		PGA1_c19280	0.72	+0.5
2,005,344	+		PGA1_c19280	0.72	-0.1
2,005,345	-		PGA1_c19280	0.72	+0.3
2,005,354	+		PGA1_c19280	0.73	+0.8
2,005,408	+		PGA1_c19280	0.78	-0.6
2,005,432	-		PGA1_c19280	0.80	-0.5
2,005,437	-		PGA1_c19280	0.81	-0.4
2,005,437	-		PGA1_c19280	0.81	-1.7
2,005,471	+		PGA1_c19280	0.84	+0.9
2,005,471	+		PGA1_c19280	0.84	+0.8
2,005,474	-		PGA1_c19280	0.84	-1.8
2,005,479	-		PGA1_c19280	0.85	-1.6
2,005,491	+		PGA1_c19280	0.86	-0.9
2,005,491	+		PGA1_c19280	0.86	-0.8
2,005,491	+		PGA1_c19280	0.86	+0.1
2,005,491	+		PGA1_c19280	0.86	+0.8
2,005,491	+		PGA1_c19280	0.86	+0.9
2,005,491	+		PGA1_c19280	0.86	-0.6
2,005,491	+		PGA1_c19280	0.86	-0.3
2,005,491	+		PGA1_c19280	0.86	-0.1
2,005,491	+		PGA1_c19280	0.86	-0.3
2,005,499	-		PGA1_c19280	0.86	-1.3
2,005,499	-		PGA1_c19280	0.86	+0.8
2,005,499	-		PGA1_c19280	0.86	-0.3
2,005,499	-		PGA1_c19280	0.86	-0.3
2,005,499	-		PGA1_c19280	0.86	+0.8
2,005,520	-		PGA1_c19280	0.89	+0.2
2,005,529	-		PGA1_c19280	0.89	+0.2
2,005,541	+				+1.1
2,005,554	+				-0.5
2,005,565	-				+0.9
2,005,565	-				-0.1
2,005,591	+				-1.0
2,005,626	+				-0.1
2,005,651	-				-1.1
2,005,651	-				+0.1
2,006,377	+				+0.1
2,006,377	+				-1.9
2,006,395	-				-0.4
2,006,397	+				-0.9
2,006,405	-				+0.4
2,006,473	+				-0.6
2,006,473	+				-0.6
2,006,473	+				-0.3
2,006,473	+				+0.8