Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18510

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
1,929,303	+				-0.0
1,929,303	+				+0.2
1,929,303	+				-2.5
1,929,303	+				+1.0
1,929,303	+				-0.4
1,929,303	+				+0.3
1,929,311	-				+0.5
1,929,311	-				+0.6
1,929,311	-				+0.3
1,929,311	-				-0.3
1,929,311	-				+1.4
1,929,311	-				+0.8
1,929,311	-				-0.1
1,929,311	-				+0.2
1,929,311	-				-0.6
1,929,311	-				+0.9
1,929,311	-				+1.2
1,929,311	-				+1.3
1,929,311	-				-0.0
1,929,331	+				-0.5
1,929,331	+				-1.1
1,929,331	+				-0.5
1,929,331	+				-1.0
1,929,331	+				+0.7
1,929,331	+				+0.3
1,929,331	+				+0.0
1,929,331	+				-0.0
1,929,331	+				-0.6
1,929,339	-				+0.6
1,929,339	-				-1.0
1,929,339	-				-2.9
1,929,339	-				-0.4
1,929,339	-				-1.1
1,929,341	+				+0.4
1,929,397	-				+1.2
1,929,397	-				+0.2
1,929,397	-				-0.1
1,929,397	-				+1.2
1,929,400	+				-0.3
1,929,400	+				+1.1
1,929,400	+				-0.4
1,929,402	+				+0.2
1,929,404	-				-0.1
1,929,404	-				+0.4
1,929,408	-				+0.7
1,929,408	-				+1.7
1,929,408	-				-0.6
1,929,408	-				+0.9
1,929,408	-				-0.3
1,929,410	-				+0.5
1,929,436	+				-0.6
1,929,436	+				+0.6
1,929,456	+				-1.0
1,929,489	+				+0.2
1,929,501	-				+0.5
1,929,519	-				-1.1
1,929,529	+				+0.6
1,929,537	-				+1.4
1,929,538	-				+0.5
1,929,543	+				+0.4
1,929,552	+				+0.2
1,929,552	+				+0.9
1,929,552	+				-0.5
1,929,552	+				+1.8
1,929,553	+				+0.5
1,929,556	-				-2.7
1,929,576	-				-0.7
1,929,578	+				+1.0
1,929,581	+				-0.1
1,929,583	+				+0.3
1,929,583	+				+0.3
1,929,589	-				-1.6
1,929,591	-				-0.6
1,929,598	+				-0.0
1,929,608	+				+0.5
1,929,609	-				-0.8
1,929,609	-				-1.7
1,929,619	+				+0.1
1,929,626	+				-2.0
1,929,626	+				-0.6
1,929,627	-				-1.8
1,929,627	-				-0.3
1,929,628	-				+0.3
1,929,634	-				+0.7
1,929,673	+				-1.1
1,929,689	+				-1.2
1,929,689	-				-0.1
1,929,691	+				-0.7
1,929,697	-				-0.2
1,929,701	+				+1.2
1,929,704	-				-0.3
1,929,716	+				+0.0
1,929,728	+				-0.2
1,929,755	-				+0.3
1,929,763	+				+0.4
1,929,763	+				+0.6
1,929,764	+				+0.6
1,929,772	-				+1.6
1,929,777	+				-0.3
1,929,783	+				+1.2
1,929,783	+				-1.0
1,929,783	+				+0.0
1,929,791	-		PGA1_c18500	0.11	+0.6
1,929,791	-		PGA1_c18500	0.11	-1.1
1,929,791	-		PGA1_c18500	0.11	+0.4
1,929,795	+		PGA1_c18500	0.11	+0.6
1,929,795	+		PGA1_c18500	0.11	-1.5
1,929,795	+		PGA1_c18500	0.11	+0.8
1,929,796	-		PGA1_c18500	0.11	-0.0
1,929,802	+		PGA1_c18500	0.13	-1.8
1,929,802	+		PGA1_c18500	0.13	-1.1
1,929,810	-		PGA1_c18500	0.14	+0.7
1,929,825	+		PGA1_c18500	0.17	+0.1
1,929,865	+		PGA1_c18500	0.24	+0.4
1,929,871	-		PGA1_c18500	0.25	-0.9
1,929,871	-		PGA1_c18500	0.25	+0.9
1,929,871	-		PGA1_c18500	0.25	+1.0
1,929,896	-		PGA1_c18500	0.29	+0.3
1,929,898	+		PGA1_c18500	0.29	+0.8
1,929,909	+		PGA1_c18500	0.31	-0.3
1,929,909	+		PGA1_c18500	0.31	-1.0
1,929,940	-		PGA1_c18500	0.37	+0.4
1,929,942	-		PGA1_c18500	0.37	+0.2
1,930,041	+		PGA1_c18500	0.55	+0.5
1,930,041	-		PGA1_c18500	0.55	-0.6
1,930,041	-		PGA1_c18500	0.55	-0.9
1,930,041	-		PGA1_c18500	0.55	-0.9
1,930,041	-		PGA1_c18500	0.55	+0.6
1,930,098	+		PGA1_c18500	0.65	-0.0
1,930,098	-		PGA1_c18500	0.65	+0.1
1,930,106	-		PGA1_c18500	0.66	-0.8
1,930,106	-		PGA1_c18500	0.66	+0.9
1,930,106	-		PGA1_c18500	0.66	-0.1
1,930,106	-		PGA1_c18500	0.66	+0.5
1,930,110	+		PGA1_c18500	0.67	-1.5
1,930,124	-		PGA1_c18500	0.69	+1.0
1,930,161	+		PGA1_c18500	0.76	-0.1
1,930,161	+		PGA1_c18500	0.76	-0.2
1,930,169	-		PGA1_c18500	0.77	+1.0
1,930,173	+		PGA1_c18500	0.78	+1.5
1,930,174	-		PGA1_c18500	0.78	+0.1
1,930,210	-		PGA1_c18500	0.84	-1.3
1,930,211	-		PGA1_c18500	0.85	-0.1
1,930,225	-		PGA1_c18500	0.87	-0.1
1,930,230	-		PGA1_c18500	0.88	+0.8
1,930,267	+				-0.6
1,930,268	-				+0.1
1,930,272	+				-1.8
1,930,275	-				+0.3
1,930,275	-				+1.1
1,930,280	-				+0.4
1,930,334	+				-1.0
1,930,334	+				-0.3
1,930,342	-				+0.6
1,930,362	+		PGA1_c18510	0.15	+1.1
1,930,386	+		PGA1_c18510	0.20	+0.1
1,930,488	-		PGA1_c18510	0.45	+0.0
1,930,508	+		PGA1_c18510	0.50	+1.2
1,930,535	+		PGA1_c18510	0.56	-2.4
1,930,567	+		PGA1_c18510	0.64	+0.1
1,930,567	+		PGA1_c18510	0.64	+1.2
1,930,575	-		PGA1_c18510	0.66	-0.1
1,930,582	+		PGA1_c18510	0.67	-0.4
1,930,652	+		PGA1_c18510	0.84	+1.2
1,930,658	+		PGA1_c18510	0.86	-0.1
1,930,663	+		PGA1_c18510	0.87	+0.9
1,930,674	-		PGA1_c18510	0.89	-0.7
1,930,686	+				+0.1
1,930,686	+				-0.1
1,930,686	+				+0.2
1,930,686	+				+0.1
1,930,694	-				-1.6
1,930,701	+				-0.1
1,930,718	-				+0.4
1,930,724	+				+0.6
1,930,732	-				-0.0
1,930,738	-				+1.7
1,930,828	+		PGA1_c18520	0.39	+0.9
1,930,844	-		PGA1_c18520	0.45	+0.9
1,930,860	+		PGA1_c18520	0.51	-0.8
1,930,860	+		PGA1_c18520	0.51	+0.2
1,930,902	+		PGA1_c18520	0.67	+1.4
1,930,910	-		PGA1_c18520	0.70	+0.4
1,930,911	+		PGA1_c18520	0.70	+1.3
1,930,920	-		PGA1_c18520	0.74	+0.1
1,930,941	-		PGA1_c18520	0.82	+0.4
1,930,962	-				+1.1
1,930,996	+				+0.6
1,930,996	-				-2.5
1,931,036	-		PGA1_c18530	0.14	-0.3
1,931,056	+		PGA1_c18530	0.20	-0.5
1,931,064	-		PGA1_c18530	0.23	-0.4
1,931,148	+		PGA1_c18530	0.50	+0.3
1,931,158	+		PGA1_c18530	0.53	-0.6
1,931,188	+		PGA1_c18530	0.63	+0.2
1,931,200	-		PGA1_c18530	0.67	+0.2
1,931,232	-		PGA1_c18530	0.77	-0.4
1,931,311	+				+0.3
1,931,319	-				+0.6
1,931,319	-				+0.4
1,931,378	+				+0.0
1,931,383	+				+0.4
1,931,409	-		PGA1_c18540	0.11	+0.2
1,931,415	+		PGA1_c18540	0.12	+0.0
1,931,415	-		PGA1_c18540	0.12	-0.1
1,931,433	+		PGA1_c18540	0.14	-0.2
1,931,441	-		PGA1_c18540	0.15	+0.8
1,931,441	-		PGA1_c18540	0.15	-0.1
1,931,470	-		PGA1_c18540	0.18	-0.3
1,931,498	-		PGA1_c18540	0.21	-1.6
1,931,519	+		PGA1_c18540	0.23	+0.6
1,931,537	-		PGA1_c18540	0.25	+0.2
1,931,557	+		PGA1_c18540	0.27	-0.0
1,931,557	+		PGA1_c18540	0.27	+0.5
1,931,565	-		PGA1_c18540	0.28	+0.3
1,931,568	+		PGA1_c18540	0.28	-0.0
1,931,612	-		PGA1_c18540	0.33	+0.8
1,931,612	-		PGA1_c18540	0.33	+0.2
1,931,636	+		PGA1_c18540	0.35	-0.0
1,931,665	+		PGA1_c18540	0.38	+0.3
1,931,665	+		PGA1_c18540	0.38	-0.5
1,931,665	+		PGA1_c18540	0.38	+0.8
1,931,670	+		PGA1_c18540	0.39	-0.7