Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17170

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
1,792,023	+		PGA1_c17130	0.67	+0.6
1,792,036	+		PGA1_c17130	0.71	-0.2
1,792,049	-		PGA1_c17130	0.75	+0.2
1,792,144	-				+0.7
1,792,158	+				+0.2
1,792,158	+				-0.3
1,792,166	-				-0.8
1,792,166	-				+1.5
1,792,245	-		PGA1_c17140	0.12	+1.4
1,792,247	-		PGA1_c17140	0.13	-0.4
1,792,286	+		PGA1_c17140	0.20	+0.7
1,792,293	+		PGA1_c17140	0.21	-0.6
1,792,298	+		PGA1_c17140	0.22	+0.4
1,792,301	-		PGA1_c17140	0.23	-1.8
1,792,303	+		PGA1_c17140	0.23	-0.8
1,792,303	+		PGA1_c17140	0.23	+1.0
1,792,306	-		PGA1_c17140	0.24	-1.5
1,792,306	-		PGA1_c17140	0.24	+0.4
1,792,311	-		PGA1_c17140	0.25	-0.5
1,792,311	-		PGA1_c17140	0.25	-1.2
1,792,311	-		PGA1_c17140	0.25	+1.4
1,792,311	-		PGA1_c17140	0.25	+0.3
1,792,357	+		PGA1_c17140	0.34	-1.3
1,792,357	+		PGA1_c17140	0.34	+0.0
1,792,357	+		PGA1_c17140	0.34	-0.5
1,792,357	+		PGA1_c17140	0.34	+0.0
1,792,430	+		PGA1_c17140	0.47	-1.3
1,792,474	+		PGA1_c17140	0.56	-1.5
1,792,482	-		PGA1_c17140	0.57	-0.6
1,792,482	-		PGA1_c17140	0.57	+1.1
1,792,482	-		PGA1_c17140	0.57	-0.6
1,792,537	+		PGA1_c17140	0.67	-0.2
1,792,553	-		PGA1_c17140	0.70	-0.0
1,792,589	-		PGA1_c17140	0.77	-1.6
1,792,659	+				+0.3
1,792,659	+				-1.4
1,792,723	+				-0.2
1,792,723	+				-0.1
1,792,723	+				+0.1
1,792,723	+				-1.3
1,792,731	-				-0.9
1,792,772	+				+1.1
1,792,820	-		PGA1_c17160	0.18	+0.1
1,792,858	-		PGA1_c17160	0.34	+0.2
1,792,982	+		PGA1_c17160	0.86	-0.4
1,792,982	+		PGA1_c17160	0.86	-1.2
1,792,990	-				+1.2
1,793,028	+				-0.8
1,793,046	-		PGA1_c17170	0.11	-0.1
1,793,056	+		PGA1_c17170	0.16	+2.0
1,793,149	+		PGA1_c17170	0.56	-1.1
1,793,169	+		PGA1_c17170	0.65	+1.0
1,793,186	+		PGA1_c17170	0.72	+0.8
1,793,194	+		PGA1_c17170	0.75	-0.2
1,793,741	-				-0.1
1,793,811	+				-0.5
1,793,819	-				-0.9
1,793,819	-				+0.1
1,793,866	+				-0.9
1,793,866	+				-0.1
1,793,874	-				-1.6
1,793,874	-				-1.0
1,793,874	-				+0.9
1,793,874	-				+1.4
1,793,874	-				+1.0
1,793,874	-				-0.1
1,793,874	-				+1.0
1,793,874	-				-0.4
1,793,921	+		PGA1_c17190	0.14	-0.6
1,793,966	+		PGA1_c17190	0.20	-0.4
1,794,008	+		PGA1_c17190	0.26	-0.2
1,794,064	+		PGA1_c17190	0.35	+0.7
1,794,116	+		PGA1_c17190	0.42	+0.4
1,794,116	+		PGA1_c17190	0.42	-0.9
1,794,119	-		PGA1_c17190	0.43	+0.3
1,794,124	-		PGA1_c17190	0.43	-0.5
1,794,124	-		PGA1_c17190	0.43	+0.4
1,794,134	+		PGA1_c17190	0.45	-0.0
1,794,134	+		PGA1_c17190	0.45	-0.1
1,794,142	-		PGA1_c17190	0.46	+0.4
1,794,142	-		PGA1_c17190	0.46	-1.3
1,794,144	+		PGA1_c17190	0.46	+0.7
1,794,165	+		PGA1_c17190	0.49	-0.4
1,794,167	+		PGA1_c17190	0.50	+0.1
1,794,170	-		PGA1_c17190	0.50	+0.3
1,794,186	-		PGA1_c17190	0.52	-0.3