Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14700

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14690 and PGA1_c14700 are separated by 51 nucleotidesPGA1_c14700 and PGA1_c14710 are separated by 216 nucleotidesPGA1_c14710 and PGA1_c14720 are separated by 73 nucleotides PGA1_c14690: PGA1_c14690 - putative hydrolase, at 1,523,207 to 1,524,349 _c14690 PGA1_c14700: PGA1_c14700 - hypothetical protein, at 1,524,401 to 1,524,727 _c14700 PGA1_c14710: PGA1_c14710 - hypoxanthine-guanine phosphoribosyltransferase Hpt, at 1,524,944 to 1,525,489 _c14710 PGA1_c14720: PGA1_c14720 - Oligoketide cyclase/lipid transport protein, at 1,525,563 to 1,526,009 _c14720 Position (kb) 1524 1525Strain fitness (log2 ratio) -2 -1 0 1 2at 1523.415 kb on + strand, within PGA1_c14690at 1523.461 kb on - strand, within PGA1_c14690at 1523.466 kb on - strand, within PGA1_c14690at 1523.491 kb on + strand, within PGA1_c14690at 1523.609 kb on - strand, within PGA1_c14690at 1523.660 kb on + strand, within PGA1_c14690at 1523.668 kb on - strand, within PGA1_c14690at 1523.668 kb on - strand, within PGA1_c14690at 1523.668 kb on - strand, within PGA1_c14690at 1523.668 kb on - strand, within PGA1_c14690at 1523.668 kb on - strand, within PGA1_c14690at 1523.710 kb on + strand, within PGA1_c14690at 1523.899 kb on + strand, within PGA1_c14690at 1523.903 kb on - strand, within PGA1_c14690at 1523.948 kb on + strand, within PGA1_c14690at 1523.958 kb on + strand, within PGA1_c14690at 1524.018 kb on - strand, within PGA1_c14690at 1524.047 kb on + strand, within PGA1_c14690at 1524.061 kb on - strand, within PGA1_c14690at 1524.169 kb on + strand, within PGA1_c14690at 1524.175 kb on + strand, within PGA1_c14690at 1524.175 kb on + strand, within PGA1_c14690at 1524.175 kb on + strand, within PGA1_c14690at 1524.427 kb on - strandat 1524.460 kb on - strand, within PGA1_c14700at 1524.463 kb on - strand, within PGA1_c14700at 1524.500 kb on + strand, within PGA1_c14700at 1524.508 kb on - strand, within PGA1_c14700at 1524.620 kb on + strand, within PGA1_c14700at 1524.653 kb on - strand, within PGA1_c14700at 1524.699 kb on - strandat 1524.711 kb on + strandat 1524.764 kb on + strandat 1524.828 kb on - strandat 1524.861 kb on - strandat 1525.050 kb on - strand, within PGA1_c14710at 1525.128 kb on - strand, within PGA1_c14710at 1525.146 kb on + strand, within PGA1_c14710at 1525.170 kb on - strand, within PGA1_c14710at 1525.378 kb on + strand, within PGA1_c14710at 1525.421 kb on - strand, within PGA1_c14710at 1525.559 kb on + strandat 1525.592 kb on + strandat 1525.600 kb on - strandat 1525.610 kb on - strand, within PGA1_c14720

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
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1,523,415 + PGA1_c14690 0.18 +0.4
1,523,461 - PGA1_c14690 0.22 -0.1
1,523,466 - PGA1_c14690 0.23 +1.7
1,523,491 + PGA1_c14690 0.25 -1.4
1,523,609 - PGA1_c14690 0.35 +0.9
1,523,660 + PGA1_c14690 0.40 -1.1
1,523,668 - PGA1_c14690 0.40 -2.5
1,523,668 - PGA1_c14690 0.40 -2.0
1,523,668 - PGA1_c14690 0.40 +1.8
1,523,668 - PGA1_c14690 0.40 -1.6
1,523,668 - PGA1_c14690 0.40 -0.2
1,523,710 + PGA1_c14690 0.44 +1.6
1,523,899 + PGA1_c14690 0.61 -0.0
1,523,903 - PGA1_c14690 0.61 +0.2
1,523,948 + PGA1_c14690 0.65 -0.3
1,523,958 + PGA1_c14690 0.66 +0.9
1,524,018 - PGA1_c14690 0.71 -1.1
1,524,047 + PGA1_c14690 0.73 +0.3
1,524,061 - PGA1_c14690 0.75 +0.3
1,524,169 + PGA1_c14690 0.84 +0.5
1,524,175 + PGA1_c14690 0.85 -0.4
1,524,175 + PGA1_c14690 0.85 +0.1
1,524,175 + PGA1_c14690 0.85 -0.7
1,524,427 - +0.2
1,524,460 - PGA1_c14700 0.18 +1.1
1,524,463 - PGA1_c14700 0.19 +1.5
1,524,500 + PGA1_c14700 0.30 +0.2
1,524,508 - PGA1_c14700 0.33 +0.6
1,524,620 + PGA1_c14700 0.67 +0.8
1,524,653 - PGA1_c14700 0.77 -0.6
1,524,699 - -0.3
1,524,711 + +0.5
1,524,764 + +0.4
1,524,828 - -0.4
1,524,861 - -0.1
1,525,050 - PGA1_c14710 0.19 -0.6
1,525,128 - PGA1_c14710 0.34 +1.4
1,525,146 + PGA1_c14710 0.37 +0.1
1,525,170 - PGA1_c14710 0.41 -0.4
1,525,378 + PGA1_c14710 0.79 +1.0
1,525,421 - PGA1_c14710 0.87 +0.3
1,525,559 + -0.0
1,525,592 + +0.3
1,525,600 - -0.6
1,525,610 - PGA1_c14720 0.11 -0.4

Or see this region's nucleotide sequence