Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12830

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
1,326,702	+		PGA1_c12820	0.34	-0.1
1,326,760	+		PGA1_c12820	0.39	-0.7
1,326,775	+		PGA1_c12820	0.40	+0.1
1,326,824	+		PGA1_c12820	0.44	-0.9
1,326,872	-		PGA1_c12820	0.48	-0.5
1,326,912	-		PGA1_c12820	0.51	-0.4
1,326,960	-		PGA1_c12820	0.54	-0.0
1,326,985	-		PGA1_c12820	0.56	-0.1
1,327,012	+		PGA1_c12820	0.58	+0.1
1,327,018	-		PGA1_c12820	0.59	-0.2
1,327,018	-		PGA1_c12820	0.59	-1.0
1,327,020	-		PGA1_c12820	0.59	+0.5
1,327,020	-		PGA1_c12820	0.59	-0.1
1,327,020	-		PGA1_c12820	0.59	+0.5
1,327,070	+		PGA1_c12820	0.63	+1.5
1,327,108	-		PGA1_c12820	0.66	-0.5
1,327,108	-		PGA1_c12820	0.66	+1.5
1,327,108	-		PGA1_c12820	0.66	+0.6
1,327,108	-		PGA1_c12820	0.66	+0.2
1,327,118	+		PGA1_c12820	0.66	+1.6
1,327,150	+		PGA1_c12820	0.69	-0.3
1,327,150	+		PGA1_c12820	0.69	-0.6
1,327,155	+		PGA1_c12820	0.69	+0.3
1,327,164	-		PGA1_c12820	0.70	+0.5
1,327,182	+		PGA1_c12820	0.71	+0.3
1,327,182	+		PGA1_c12820	0.71	-0.0
1,327,190	-		PGA1_c12820	0.72	-0.4
1,327,190	-		PGA1_c12820	0.72	-0.8
1,327,190	-		PGA1_c12820	0.72	-1.6
1,327,191	-		PGA1_c12820	0.72	-2.3
1,327,210	+		PGA1_c12820	0.73	-0.0
1,327,283	+		PGA1_c12820	0.79	+0.2
1,327,315	-		PGA1_c12820	0.81	+0.1
1,327,335	+		PGA1_c12820	0.83	+0.7
1,327,404	-		PGA1_c12820	0.88	+0.5
1,327,404	-		PGA1_c12820	0.88	+0.2
1,327,425	+		PGA1_c12820	0.90	+0.2
1,327,433	-				+1.0
1,327,470	+				+0.6
1,327,521	+				-0.1
1,327,553	-				+0.3
1,327,679	-				-1.5
1,327,719	+				+0.5
1,327,730	+		PGA1_c12830	0.10	+1.0
1,327,783	+		PGA1_c12830	0.19	+1.5
1,327,857	+		PGA1_c12830	0.30	-0.7
1,327,860	-		PGA1_c12830	0.31	-1.1
1,327,898	-		PGA1_c12830	0.37	-0.9
1,327,983	+		PGA1_c12830	0.51	+0.7
1,328,009	+		PGA1_c12830	0.55	+1.1
1,328,009	+		PGA1_c12830	0.55	+1.3
1,328,009	+		PGA1_c12830	0.55	+1.1
1,328,009	+		PGA1_c12830	0.55	-0.7
1,328,009	+		PGA1_c12830	0.55	-0.2
1,328,009	+		PGA1_c12830	0.55	-1.3
1,328,012	-		PGA1_c12830	0.55	-0.6
1,328,016	+		PGA1_c12830	0.56	-0.7
1,328,017	-		PGA1_c12830	0.56	-0.0
1,328,017	-		PGA1_c12830	0.56	-1.0
1,328,056	-		PGA1_c12830	0.62	+0.9
1,328,074	-		PGA1_c12830	0.65	+0.6
1,328,079	+		PGA1_c12830	0.66	+0.7
1,328,134	-		PGA1_c12830	0.75	+0.1
1,328,295	+				+0.0
1,328,295	+				-0.3
1,328,323	+				-0.1
1,328,418	-				+0.8
1,328,465	-				+0.3
1,328,476	+				+0.2
1,328,476	+				-0.5
1,328,476	-				-1.1
1,328,484	-				+1.2
1,328,531	-				+0.0
1,328,638	-				-0.6
1,328,678	+		PGA1_c12840	0.12	+0.3
1,328,680	-		PGA1_c12840	0.12	-2.0
1,328,680	-		PGA1_c12840	0.12	-0.4
1,328,755	+		PGA1_c12840	0.18	-0.0
1,328,801	+		PGA1_c12840	0.22	-1.1
1,328,801	+		PGA1_c12840	0.22	+0.4
1,328,809	-		PGA1_c12840	0.22	-0.2
1,328,828	+		PGA1_c12840	0.24	+0.3
1,328,845	+		PGA1_c12840	0.25	-0.5
1,328,845	+		PGA1_c12840	0.25	+0.0
1,328,887	-		PGA1_c12840	0.29	-0.6
1,328,987	+		PGA1_c12840	0.37	+2.3
1,328,987	+		PGA1_c12840	0.37	+1.4
1,328,987	+		PGA1_c12840	0.37	+1.7
1,328,995	-		PGA1_c12840	0.37	+1.5
1,328,995	-		PGA1_c12840	0.37	+0.3
1,328,995	-		PGA1_c12840	0.37	+1.6
1,328,995	-		PGA1_c12840	0.37	+0.6
1,329,000	-		PGA1_c12840	0.38	+0.3
1,329,045	-		PGA1_c12840	0.41	+0.4
1,329,069	-		PGA1_c12840	0.43	-1.3
1,329,158	+		PGA1_c12840	0.50	-0.1
1,329,163	+		PGA1_c12840	0.51	+0.3
1,329,163	+		PGA1_c12840	0.51	+0.2
1,329,169	+		PGA1_c12840	0.51	+0.3
1,329,173	-		PGA1_c12840	0.51	+0.8
1,329,188	+		PGA1_c12840	0.53	+0.5
1,329,196	-		PGA1_c12840	0.53	+0.1
1,329,245	+		PGA1_c12840	0.57	+0.7
1,329,261	+		PGA1_c12840	0.59	+0.6
1,329,263	-		PGA1_c12840	0.59	+2.0