Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11860

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
1,228,268	+				+0.5
1,228,429	+				-0.2
1,228,453	-		PGA1_c11850	0.11	+0.9
1,228,477	-		PGA1_c11850	0.14	-0.1
1,228,498	-		PGA1_c11850	0.17	+1.4
1,228,503	-		PGA1_c11850	0.18	-0.4
1,228,503	-		PGA1_c11850	0.18	-2.1
1,228,553	+		PGA1_c11850	0.25	+1.1
1,228,610	-		PGA1_c11850	0.34	-0.5
1,228,732	-		PGA1_c11850	0.52	+0.5
1,228,820	-		PGA1_c11850	0.65	-0.0
1,228,820	-		PGA1_c11850	0.65	-0.4
1,228,864	-		PGA1_c11850	0.71	-1.7
1,228,866	+		PGA1_c11850	0.72	+0.7
1,228,879	-		PGA1_c11850	0.73	-0.2
1,228,913	+		PGA1_c11850	0.78	+0.1
1,228,986	-		PGA1_c11850	0.89	-2.1
1,229,037	-				+0.5
1,229,134	-				-0.4
1,229,174	+		PGA1_c11860	0.13	+0.6
1,229,174	+		PGA1_c11860	0.13	-1.7
1,229,182	-		PGA1_c11860	0.16	-0.2
1,229,202	-		PGA1_c11860	0.23	+0.2
1,229,262	+		PGA1_c11860	0.44	+1.4
1,229,262	+		PGA1_c11860	0.44	+0.7
1,229,262	+		PGA1_c11860	0.44	+0.7
1,229,269	+		PGA1_c11860	0.46	-1.4
1,229,270	-		PGA1_c11860	0.47	+0.0
1,229,270	-		PGA1_c11860	0.47	+0.1
1,229,291	+		PGA1_c11860	0.54	+1.4
1,229,296	+		PGA1_c11860	0.56	-1.2
1,229,299	-		PGA1_c11860	0.57	+0.6
1,229,299	-		PGA1_c11860	0.57	+0.9
1,229,299	-		PGA1_c11860	0.57	+0.2
1,229,301	+		PGA1_c11860	0.58	+1.5
1,229,301	+		PGA1_c11860	0.58	-0.4
1,229,301	+		PGA1_c11860	0.58	+0.7
1,229,309	-		PGA1_c11860	0.60	+1.1
1,229,400	+				-0.4
1,229,408	-				-0.5
1,229,409	-				-0.1
1,229,415	+				-3.0
1,229,452	-				-1.1
1,229,506	-				+0.5
1,229,507	-				-0.0
1,229,561	+				+0.1
1,229,582	-				+0.1
1,229,674	-		PGA1_c11870	0.13	+0.4
1,229,682	-		PGA1_c11870	0.14	+0.5
1,229,692	-		PGA1_c11870	0.15	+0.7
1,229,765	+		PGA1_c11870	0.20	-0.8
1,229,765	+		PGA1_c11870	0.20	+0.5
1,229,765	+		PGA1_c11870	0.20	-0.8
1,229,773	-		PGA1_c11870	0.21	+0.1
1,229,773	-		PGA1_c11870	0.21	+1.7
1,229,773	-		PGA1_c11870	0.21	-0.6
1,229,773	-		PGA1_c11870	0.21	+1.4
1,229,773	-		PGA1_c11870	0.21	+1.1
1,229,773	-		PGA1_c11870	0.21	-1.1
1,229,773	-		PGA1_c11870	0.21	-2.1
1,229,773	-		PGA1_c11870	0.21	+1.8
1,229,792	+		PGA1_c11870	0.22	-0.6
1,229,792	+		PGA1_c11870	0.22	-0.7
1,229,807	-		PGA1_c11870	0.24	-0.9
1,229,829	-		PGA1_c11870	0.25	+0.4
1,229,865	+		PGA1_c11870	0.28	+1.0
1,229,873	-		PGA1_c11870	0.29	+1.0
1,229,981	+		PGA1_c11870	0.37	+1.8
1,229,999	-		PGA1_c11870	0.38	+1.2
1,230,001	-		PGA1_c11870	0.38	-0.1
1,230,091	+		PGA1_c11870	0.45	-0.4
1,230,126	+		PGA1_c11870	0.48	+0.3
1,230,126	+		PGA1_c11870	0.48	-2.6
1,230,126	+		PGA1_c11870	0.48	-1.7
1,230,134	-		PGA1_c11870	0.49	+1.4
1,230,134	-		PGA1_c11870	0.49	+1.2
1,230,134	-		PGA1_c11870	0.49	-0.1
1,230,351	+		PGA1_c11870	0.65	-0.3
1,230,395	-		PGA1_c11870	0.69	-0.0
1,230,410	+		PGA1_c11870	0.70	+1.2
1,230,410	+		PGA1_c11870	0.70	-1.4
1,230,410	+		PGA1_c11870	0.70	+0.5
1,230,418	-		PGA1_c11870	0.71	+0.3
1,230,418	-		PGA1_c11870	0.71	+0.9