Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10470

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10460 and PGA1_c10470 overlap by 4 nucleotidesPGA1_c10470 and PGA1_c10480 are separated by 6 nucleotides PGA1_c10460: PGA1_c10460 - NADH-quinone oxidoreductase subunit G, at 1,081,827 to 1,083,845 _c10460 PGA1_c10470: PGA1_c10470 - hypothetical protein, at 1,083,842 to 1,084,228 _c10470 PGA1_c10480: PGA1_c10480 - NADH-quinone oxidoreductase subunit H, at 1,084,235 to 1,085,272 _c10480 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -1 0 1at 1083.983 kb on + strand, within PGA1_c10470at 1084.076 kb on + strand, within PGA1_c10470at 1084.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
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1,083,983 + PGA1_c10470 0.36 +0.7
1,084,076 + PGA1_c10470 0.60 +0.7
1,084,225 + -0.6

Or see this region's nucleotide sequence