Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1200

Experiment: BG11

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11
1,227,257	-				-0.4
1,227,333	+				+1.3
1,227,333	+				+0.8
1,227,363	-				-0.2
1,227,422	+		Synpcc7942_1199	0.17	+0.7
1,227,422	+		Synpcc7942_1199	0.17	-0.4
1,227,422	+		Synpcc7942_1199	0.17	-1.0
1,227,427	+		Synpcc7942_1199	0.18	+2.8
1,227,430	-		Synpcc7942_1199	0.18	+0.1
1,227,431	-		Synpcc7942_1199	0.18	-0.2
1,227,431	-		Synpcc7942_1199	0.18	+0.4
1,227,434	+		Synpcc7942_1199	0.19	+0.8
1,227,442	-		Synpcc7942_1199	0.20	-0.8
1,227,442	-		Synpcc7942_1199	0.20	+0.5
1,227,479	+		Synpcc7942_1199	0.25	-0.2
1,227,482	-		Synpcc7942_1199	0.25	-0.6
1,227,482	-		Synpcc7942_1199	0.25	+2.6
1,227,513	-		Synpcc7942_1199	0.30	-0.6
1,227,537	+		Synpcc7942_1199	0.33	+0.8
1,227,543	-		Synpcc7942_1199	0.34	-0.2
1,227,551	+		Synpcc7942_1199	0.35	-0.3
1,227,557	+		Synpcc7942_1199	0.36	-0.2
1,227,559	-		Synpcc7942_1199	0.36	-0.9
1,227,564	+		Synpcc7942_1199	0.37	-0.0
1,227,569	+		Synpcc7942_1199	0.38	+0.4
1,227,572	-		Synpcc7942_1199	0.38	-0.6
1,227,618	+		Synpcc7942_1199	0.45	+0.3
1,227,625	+		Synpcc7942_1199	0.46	-0.2
1,227,641	+		Synpcc7942_1199	0.48	-0.5
1,227,694	+		Synpcc7942_1199	0.55	-0.2
1,227,755	+		Synpcc7942_1199	0.64	-0.8
1,227,763	-		Synpcc7942_1199	0.65	+0.7
1,227,783	-		Synpcc7942_1199	0.68	-0.3
1,227,785	+		Synpcc7942_1199	0.68	-1.1
1,227,790	+		Synpcc7942_1199	0.69	-0.4
1,227,800	+		Synpcc7942_1199	0.70	+0.5
1,227,800	+		Synpcc7942_1199	0.70	-1.4
1,227,808	-		Synpcc7942_1199	0.72	-0.3
1,227,808	-		Synpcc7942_1199	0.72	+5.8
1,227,834	-		Synpcc7942_1199	0.75	-0.2
1,227,834	-		Synpcc7942_1199	0.75	-0.6
1,227,839	+		Synpcc7942_1199	0.76	+0.7
1,227,839	+		Synpcc7942_1199	0.76	-1.1
1,227,928	+		Synpcc7942_1199	0.89	-0.1
1,227,990	-				-0.6
1,227,990	-				-1.1
1,227,993	-				-0.1
1,228,026	-				+0.1
1,228,026	-				-0.6
1,228,026	-				+0.5
1,228,026	-				-1.1
1,228,079	-				+0.0
1,228,082	+				-0.8
1,228,082	+				-1.0
1,228,082	+				+0.9
1,228,082	+				+3.6
1,228,082	+				+0.5
1,228,084	-				-0.1
1,228,084	-				+0.3
1,228,090	-				-1.0
1,228,090	-				+0.4
1,228,092	-				-1.8
1,228,116	+				+0.8
1,228,132	+				+0.7
1,228,145	-				-1.1
1,228,234	+		Synpcc7942_1200	0.18	-0.9
1,228,263	+		Synpcc7942_1200	0.21	-1.0
1,228,279	+		Synpcc7942_1200	0.23	-0.3
1,228,292	+		Synpcc7942_1200	0.24	-1.3
1,228,293	-		Synpcc7942_1200	0.24	-2.4
1,228,311	-		Synpcc7942_1200	0.26	-1.3
1,228,405	-		Synpcc7942_1200	0.35	-0.9
1,228,462	+		Synpcc7942_1200	0.41	-0.3
1,228,470	-		Synpcc7942_1200	0.42	-2.5
1,228,483	+		Synpcc7942_1200	0.43	-1.8
1,228,483	+		Synpcc7942_1200	0.43	-0.1
1,228,483	+		Synpcc7942_1200	0.43	-1.7
1,228,483	+		Synpcc7942_1200	0.43	-0.8
1,228,483	+		Synpcc7942_1200	0.43	-1.1
1,228,483	+		Synpcc7942_1200	0.43	-0.5
1,228,491	-		Synpcc7942_1200	0.44	-2.9
1,228,491	-		Synpcc7942_1200	0.44	-0.4
1,228,491	-		Synpcc7942_1200	0.44	-0.3
1,228,491	-		Synpcc7942_1200	0.44	+2.6
1,228,534	-		Synpcc7942_1200	0.48	-0.6
1,228,558	+		Synpcc7942_1200	0.50	-1.0
1,228,563	+		Synpcc7942_1200	0.51	-1.0
1,228,571	-		Synpcc7942_1200	0.52	-1.6
1,228,581	+		Synpcc7942_1200	0.53	-0.1
1,228,597	+		Synpcc7942_1200	0.54	-0.6
1,228,603	+		Synpcc7942_1200	0.55	-2.2
1,228,610	-		Synpcc7942_1200	0.55	+0.2
1,228,642	+		Synpcc7942_1200	0.59	-2.6
1,228,656	+		Synpcc7942_1200	0.60	+0.6
1,228,656	+		Synpcc7942_1200	0.60	-1.1
1,228,661	+		Synpcc7942_1200	0.60	-1.7
1,228,661	+		Synpcc7942_1200	0.60	-1.4
1,228,661	+		Synpcc7942_1200	0.60	-0.9
1,228,662	-		Synpcc7942_1200	0.61	-0.0
1,228,664	-		Synpcc7942_1200	0.61	-1.6
1,228,664	-		Synpcc7942_1200	0.61	-1.1
1,228,729	+		Synpcc7942_1200	0.67	-0.5
1,228,776	+		Synpcc7942_1200	0.72	-2.0
1,228,776	+		Synpcc7942_1200	0.72	+0.2
1,228,799	-		Synpcc7942_1200	0.74	-0.4
1,228,811	-		Synpcc7942_1200	0.75	+0.0
1,228,811	-		Synpcc7942_1200	0.75	-1.9
1,228,863	+		Synpcc7942_1200	0.80	-2.1
1,228,879	-		Synpcc7942_1200	0.82	-0.6
1,228,879	-		Synpcc7942_1200	0.82	-4.1
1,228,884	-		Synpcc7942_1200	0.82	-1.4
1,228,903	-		Synpcc7942_1200	0.84	-0.7
1,228,903	-		Synpcc7942_1200	0.84	-2.1
1,228,905	-		Synpcc7942_1200	0.85	-2.2
1,228,966	-				-3.0
1,228,971	+				-1.3
1,228,976	+				-1.8
1,228,979	-				-0.3
1,229,007	+				-0.7
1,229,030	-				-1.1
1,229,039	+				-0.1
1,229,040	-				-0.3
1,229,041	-				-0.6
1,229,046	+				-1.9
1,229,049	-				-2.6
1,229,052	-				+0.0
1,229,056	+				-0.3
1,229,056	+				-0.8
1,229,056	+				-1.4
1,229,056	+				-0.9
1,229,064	-				-0.6
1,229,064	-				+0.4
1,229,069	-				-0.1
1,229,074	+				-0.1
1,229,125	-				-1.2
1,229,146	+				+0.1
1,229,154	-				+0.4
1,229,179	+				-2.3
1,229,246	-		Synpcc7942_1201	0.12	-1.3
1,229,307	+		Synpcc7942_1201	0.16	-0.1
1,229,325	-		Synpcc7942_1201	0.17	-0.7
1,229,337	-		Synpcc7942_1201	0.18	-2.1
1,229,377	+		Synpcc7942_1201	0.21	+0.4
1,229,400	+		Synpcc7942_1201	0.23	-1.9
1,229,518	+		Synpcc7942_1201	0.31	-1.4
1,229,524	+		Synpcc7942_1201	0.31	-3.3
1,229,566	-		Synpcc7942_1201	0.34	-1.3
1,229,588	+		Synpcc7942_1201	0.36	-1.5
1,229,588	+		Synpcc7942_1201	0.36	-2.8
1,229,588	+		Synpcc7942_1201	0.36	-1.1
1,229,588	+		Synpcc7942_1201	0.36	-1.2
1,229,588	+		Synpcc7942_1201	0.36	-2.1
1,229,596	-		Synpcc7942_1201	0.36	-1.0
1,229,596	-		Synpcc7942_1201	0.36	-0.6
1,229,634	+		Synpcc7942_1201	0.39	-2.4
1,229,640	-		Synpcc7942_1201	0.39	-0.5
1,229,642	-		Synpcc7942_1201	0.39	-1.9
1,229,652	-		Synpcc7942_1201	0.40	-2.0
1,229,675	-		Synpcc7942_1201	0.42	+0.2
1,229,702	+		Synpcc7942_1201	0.44	-0.3
1,229,707	+		Synpcc7942_1201	0.44	-0.5
1,229,710	-		Synpcc7942_1201	0.44	-0.5
1,229,725	+		Synpcc7942_1201	0.45	-0.1
1,229,725	-		Synpcc7942_1201	0.45	-0.9
1,229,728	-		Synpcc7942_1201	0.45	-3.3
1,229,838	+		Synpcc7942_1201	0.53	-2.6
1,229,860	+		Synpcc7942_1201	0.55	-2.5
1,229,869	+		Synpcc7942_1201	0.55	+0.4
1,229,947	-		Synpcc7942_1201	0.61	-2.6
1,229,994	-		Synpcc7942_1201	0.64	-0.7
1,229,998	-		Synpcc7942_1201	0.64	-2.3
1,230,014	+		Synpcc7942_1201	0.65	-0.3