Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt merR and Synpcc7942_0840 are separated by 36 nucleotides Synpcc7942_0840 and Synpcc7942_0841 are separated by 197 nucleotides
Synpcc7942_0839: merR - Nitrilase, at 833,950 to 834,954
merR
Synpcc7942_0840: Synpcc7942_0840 - hypothetical protein, at 834,991 to 835,473
_0840
Synpcc7942_0841: Synpcc7942_0841 - putative flavoprotein involved in K+ transport, at 835,671 to 837,011
_0841
Position (kb) 834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 833.993 kb on - strand at 833.998 kb on - strand at 834.029 kb on - strand at 834.054 kb on - strand, within merR at 834.066 kb on + strand, within merR at 834.071 kb on + strand, within merR at 834.074 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.107 kb on - strand, within merR at 834.132 kb on - strand, within merR at 834.189 kb on - strand, within merR at 834.202 kb on - strand, within merR at 834.204 kb on + strand, within merR at 834.204 kb on + strand, within merR at 834.212 kb on - strand, within merR at 834.212 kb on - strand, within merR at 834.217 kb on - strand, within merR at 834.222 kb on - strand, within merR at 834.226 kb on + strand, within merR at 834.246 kb on - strand, within merR at 834.253 kb on - strand, within merR at 834.291 kb on + strand, within merR at 834.315 kb on + strand, within merR at 834.318 kb on - strand, within merR at 834.351 kb on + strand, within merR at 834.375 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.455 kb on + strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.476 kb on + strand, within merR at 834.481 kb on + strand, within merR at 834.482 kb on + strand, within merR at 834.488 kb on + strand, within merR at 834.489 kb on - strand, within merR at 834.490 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.513 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand at 834.527 kb on + strand, within merR at 834.537 kb on - strand, within merR at 834.546 kb on - strand, within merR at 834.547 kb on - strand, within merR at 834.616 kb on - strand, within merR at 834.651 kb on + strand, within merR at 834.651 kb on - strand, within merR at 834.659 kb on - strand, within merR at 834.711 kb on + strand, within merR at 834.746 kb on + strand, within merR at 834.754 kb on - strand, within merR at 834.800 kb on + strand, within merR at 834.904 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.927 kb on - strand at 834.962 kb on + strand at 835.139 kb on + strand, within Synpcc7942_0840 at 835.233 kb on - strand at 835.259 kb on + strand, within Synpcc7942_0840 at 835.259 kb on + strand, within Synpcc7942_0840 at 835.262 kb on - strand, within Synpcc7942_0840 at 835.341 kb on + strand, within Synpcc7942_0840 at 835.472 kb on - strand at 835.673 kb on + strand at 835.705 kb on + strand at 835.705 kb on + strand at 835.706 kb on + strand at 835.713 kb on - strand at 835.713 kb on - strand at 835.714 kb on - strand at 835.714 kb on - strand at 835.732 kb on + strand at 835.740 kb on - strand at 835.770 kb on + strand at 835.778 kb on - strand at 835.792 kb on - strand at 835.813 kb on + strand, within Synpcc7942_0841 at 835.823 kb on - strand, within Synpcc7942_0841 at 835.827 kb on + strand, within Synpcc7942_0841 at 835.828 kb on - strand, within Synpcc7942_0841 at 835.835 kb on - strand, within Synpcc7942_0841 at 835.860 kb on + strand, within Synpcc7942_0841 at 835.933 kb on - strand, within Synpcc7942_0841 at 835.983 kb on + strand, within Synpcc7942_0841 at 836.003 kb on - strand, within Synpcc7942_0841 at 836.028 kb on - strand, within Synpcc7942_0841 at 836.062 kb on + strand, within Synpcc7942_0841 at 836.062 kb on + strand, within Synpcc7942_0841 at 836.085 kb on + strand, within Synpcc7942_0841 at 836.090 kb on + strand, within Synpcc7942_0841 at 836.093 kb on - strand, within Synpcc7942_0841 at 836.098 kb on - strand, within Synpcc7942_0841 at 836.098 kb on - strand, within Synpcc7942_0841 at 836.100 kb on + strand, within Synpcc7942_0841 at 836.115 kb on - strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.148 kb on - strand, within Synpcc7942_0841 at 836.160 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.224 kb on - strand, within Synpcc7942_0841 at 836.232 kb on + strand, within Synpcc7942_0841 at 836.277 kb on + strand at 836.282 kb on + strand, within Synpcc7942_0841 at 836.301 kb on - strand, within Synpcc7942_0841 at 836.309 kb on - strand, within Synpcc7942_0841 at 836.330 kb on - strand, within Synpcc7942_0841 at 836.342 kb on - strand, within Synpcc7942_0841 at 836.348 kb on + strand, within Synpcc7942_0841 at 836.392 kb on - strand, within Synpcc7942_0841 at 836.407 kb on + strand, within Synpcc7942_0841 at 836.415 kb on + strand, within Synpcc7942_0841 at 836.449 kb on + strand, within Synpcc7942_0841
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 833,993 - +0.4 833,998 - -0.3 834,029 - +1.1 834,054 - merR Synpcc7942_0839 0.10 -0.2 834,066 + merR Synpcc7942_0839 0.12 +1.2 834,071 + merR Synpcc7942_0839 0.12 +0.1 834,074 - merR Synpcc7942_0839 0.12 +0.6 834,084 - merR Synpcc7942_0839 0.13 -0.2 834,084 - merR Synpcc7942_0839 0.13 +0.9 834,107 - merR Synpcc7942_0839 0.16 -0.5 834,132 - merR Synpcc7942_0839 0.18 +0.7 834,189 - merR Synpcc7942_0839 0.24 +0.7 834,202 - merR Synpcc7942_0839 0.25 -0.8 834,204 + merR Synpcc7942_0839 0.25 -0.2 834,204 + merR Synpcc7942_0839 0.25 -0.4 834,212 - merR Synpcc7942_0839 0.26 -0.5 834,212 - merR Synpcc7942_0839 0.26 -0.1 834,217 - merR Synpcc7942_0839 0.27 +1.3 834,222 - merR Synpcc7942_0839 0.27 -0.2 834,226 + merR Synpcc7942_0839 0.27 +0.1 834,246 - merR Synpcc7942_0839 0.29 -0.5 834,253 - merR Synpcc7942_0839 0.30 -0.5 834,291 + merR Synpcc7942_0839 0.34 +2.1 834,315 + merR Synpcc7942_0839 0.36 -1.1 834,318 - merR Synpcc7942_0839 0.37 +1.1 834,351 + merR Synpcc7942_0839 0.40 -0.6 834,375 + merR Synpcc7942_0839 0.42 +0.4 834,448 + merR Synpcc7942_0839 0.50 -1.5 834,448 + merR Synpcc7942_0839 0.50 -1.2 834,448 + merR Synpcc7942_0839 0.50 +0.1 834,448 + merR Synpcc7942_0839 0.50 -0.7 834,455 + merR Synpcc7942_0839 0.50 -0.6 834,456 - merR Synpcc7942_0839 0.50 -0.5 834,456 - merR Synpcc7942_0839 0.50 -0.6 834,456 - merR Synpcc7942_0839 0.50 -2.2 834,463 - merR Synpcc7942_0839 0.51 +2.3 834,463 - merR Synpcc7942_0839 0.51 +0.5 834,476 + merR Synpcc7942_0839 0.52 -0.8 834,481 + merR Synpcc7942_0839 0.53 +0.6 834,482 + merR Synpcc7942_0839 0.53 +0.8 834,488 + merR Synpcc7942_0839 0.54 -0.8 834,489 - merR Synpcc7942_0839 0.54 -0.7 834,490 - merR Synpcc7942_0839 0.54 +0.3 834,496 - merR Synpcc7942_0839 0.54 -0.2 834,496 - merR Synpcc7942_0839 0.54 -1.0 834,496 - merR Synpcc7942_0839 0.54 +0.6 834,496 - merR Synpcc7942_0839 0.54 +1.0 834,496 - merR Synpcc7942_0839 0.54 -1.7 834,496 - merR Synpcc7942_0839 0.54 -0.4 834,513 + merR Synpcc7942_0839 0.56 -0.9 834,514 + merR Synpcc7942_0839 0.56 +0.9 834,514 + merR Synpcc7942_0839 0.56 -0.2 834,514 + merR Synpcc7942_0839 0.56 -0.2 834,514 + merR Synpcc7942_0839 0.56 -0.6 834,522 - merR Synpcc7942_0839 0.57 -0.7 834,522 - merR Synpcc7942_0839 0.57 -0.5 834,522 - merR Synpcc7942_0839 0.57 +0.3 834,522 - merR Synpcc7942_0839 0.57 -1.4 834,522 - -0.5 834,527 + merR Synpcc7942_0839 0.57 +0.2 834,537 - merR Synpcc7942_0839 0.58 -0.8 834,546 - merR Synpcc7942_0839 0.59 +0.8 834,547 - merR Synpcc7942_0839 0.59 -0.0 834,616 - merR Synpcc7942_0839 0.66 -0.3 834,651 + merR Synpcc7942_0839 0.70 +0.5 834,651 - merR Synpcc7942_0839 0.70 -0.0 834,659 - merR Synpcc7942_0839 0.71 -0.2 834,711 + merR Synpcc7942_0839 0.76 +0.1 834,746 + merR Synpcc7942_0839 0.79 -0.1 834,754 - merR Synpcc7942_0839 0.80 -2.0 834,800 + merR Synpcc7942_0839 0.85 +0.3 834,904 + -1.8 834,912 - -1.5 834,912 - +0.1 834,927 - +0.8 834,962 + -1.5 835,139 + Synpcc7942_0840 0.31 +0.3 835,233 - +0.7 835,259 + Synpcc7942_0840 0.55 +0.9 835,259 + Synpcc7942_0840 0.55 -1.3 835,262 - Synpcc7942_0840 0.56 -0.5 835,341 + Synpcc7942_0840 0.72 +0.7 835,472 - -1.9 835,673 + -1.5 835,705 + +0.0 835,705 + -0.3 835,706 + -0.1 835,713 - +0.5 835,713 - -0.5 835,714 - -1.1 835,714 - +0.3 835,732 + -0.8 835,740 - +0.6 835,770 + +1.1 835,778 - -0.4 835,792 - +0.5 835,813 + Synpcc7942_0841 0.11 -0.6 835,823 - Synpcc7942_0841 0.11 -0.0 835,827 + Synpcc7942_0841 0.12 +0.7 835,828 - Synpcc7942_0841 0.12 +0.4 835,835 - Synpcc7942_0841 0.12 -0.3 835,860 + Synpcc7942_0841 0.14 -0.5 835,933 - Synpcc7942_0841 0.20 +1.0 835,983 + Synpcc7942_0841 0.23 +0.9 836,003 - Synpcc7942_0841 0.25 +0.3 836,028 - Synpcc7942_0841 0.27 +1.3 836,062 + Synpcc7942_0841 0.29 +0.1 836,062 + Synpcc7942_0841 0.29 -1.1 836,085 + Synpcc7942_0841 0.31 +0.1 836,090 + Synpcc7942_0841 0.31 -0.9 836,093 - Synpcc7942_0841 0.31 -2.2 836,098 - Synpcc7942_0841 0.32 +0.1 836,098 - Synpcc7942_0841 0.32 +0.2 836,100 + Synpcc7942_0841 0.32 -0.4 836,115 - Synpcc7942_0841 0.33 -1.9 836,123 + Synpcc7942_0841 0.34 +0.8 836,123 + Synpcc7942_0841 0.34 -0.0 836,123 + Synpcc7942_0841 0.34 -0.1 836,148 - Synpcc7942_0841 0.36 -1.0 836,160 + Synpcc7942_0841 0.36 -2.1 836,206 + Synpcc7942_0841 0.40 +0.3 836,206 + Synpcc7942_0841 0.40 +0.1 836,206 + Synpcc7942_0841 0.40 -0.9 836,206 + Synpcc7942_0841 0.40 -0.2 836,214 - Synpcc7942_0841 0.40 +0.4 836,214 - Synpcc7942_0841 0.40 -0.1 836,214 - Synpcc7942_0841 0.40 -0.9 836,214 - Synpcc7942_0841 0.40 +0.1 836,214 - Synpcc7942_0841 0.40 +0.5 836,214 - Synpcc7942_0841 0.40 -1.1 836,224 - Synpcc7942_0841 0.41 +1.3 836,232 + Synpcc7942_0841 0.42 +0.1 836,277 + -0.2 836,282 + Synpcc7942_0841 0.46 +0.1 836,301 - Synpcc7942_0841 0.47 +0.3 836,309 - Synpcc7942_0841 0.48 +1.8 836,330 - Synpcc7942_0841 0.49 +0.4 836,342 - Synpcc7942_0841 0.50 +1.1 836,348 + Synpcc7942_0841 0.50 -2.3 836,392 - Synpcc7942_0841 0.54 -1.5 836,407 + Synpcc7942_0841 0.55 +0.3 836,415 + Synpcc7942_0841 0.55 -0.6 836,449 + Synpcc7942_0841 0.58 -0.5
Or see this region's nucleotide sequence