Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0782 and hisG are separated by 32 nucleotides hisG and Synpcc7942_0784 are separated by 285 nucleotides Synpcc7942_0784 and ponA overlap by 68 nucleotides
Synpcc7942_0782: Synpcc7942_0782 - ATPase, at 776,760 to 778,556
_0782
Synpcc7942_0783: hisG - ATP phosphoribosyltransferase catalytic subunit, at 778,589 to 779,245
hisG
Synpcc7942_0784: Synpcc7942_0784 - hypothetical protein, at 779,531 to 779,848
_0784
Synpcc7942_0785: ponA - Penicillin-binding protein 1A, at 779,781 to 781,919
ponA
Position (kb) 779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 778.545 kb on - strand at 778.547 kb on - strand at 778.573 kb on - strand at 778.575 kb on + strand at 778.575 kb on + strand at 778.580 kb on + strand at 778.583 kb on - strand at 778.583 kb on - strand at 778.610 kb on - strand at 778.612 kb on + strand at 778.622 kb on - strand at 779.280 kb on - strand at 779.284 kb on + strand at 779.297 kb on - strand at 779.307 kb on - strand at 779.312 kb on - strand at 779.314 kb on + strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.324 kb on + strand at 779.326 kb on + strand at 779.348 kb on - strand at 779.353 kb on - strand at 779.357 kb on + strand at 779.369 kb on + strand at 779.398 kb on - strand at 779.447 kb on + strand at 779.455 kb on - strand at 779.491 kb on + strand at 779.497 kb on - strand at 779.499 kb on - strand at 779.515 kb on - strand at 779.531 kb on + strand at 779.539 kb on - strand at 779.555 kb on + strand at 779.563 kb on - strand, within Synpcc7942_0784 at 779.581 kb on + strand, within Synpcc7942_0784 at 779.604 kb on + strand, within Synpcc7942_0784 at 779.612 kb on + strand, within Synpcc7942_0784 at 779.612 kb on + strand, within Synpcc7942_0784 at 779.619 kb on - strand, within Synpcc7942_0784 at 779.620 kb on - strand, within Synpcc7942_0784 at 779.653 kb on + strand at 779.742 kb on + strand, within Synpcc7942_0784 at 779.745 kb on - strand, within Synpcc7942_0784 at 779.750 kb on - strand, within Synpcc7942_0784 at 779.756 kb on - strand, within Synpcc7942_0784 at 779.791 kb on + strand at 779.822 kb on - strand at 779.822 kb on - strand at 779.843 kb on + strand at 779.850 kb on - strand at 779.895 kb on - strand at 779.896 kb on - strand at 779.923 kb on - strand at 779.944 kb on + strand at 779.964 kb on - strand at 779.968 kb on - strand at 779.982 kb on + strand at 780.003 kb on - strand, within ponA at 780.015 kb on + strand, within ponA at 780.020 kb on + strand, within ponA at 780.020 kb on + strand at 780.025 kb on + strand, within ponA at 780.028 kb on - strand, within ponA at 780.028 kb on - strand, within ponA at 780.028 kb on - strand, within ponA at 780.038 kb on - strand, within ponA at 780.051 kb on - strand, within ponA at 780.061 kb on + strand, within ponA at 780.061 kb on - strand, within ponA at 780.065 kb on + strand, within ponA at 780.071 kb on + strand, within ponA at 780.073 kb on - strand, within ponA at 780.075 kb on + strand, within ponA at 780.076 kb on + strand, within ponA at 780.084 kb on + strand, within ponA at 780.096 kb on - strand, within ponA at 780.098 kb on - strand, within ponA at 780.099 kb on - strand, within ponA at 780.141 kb on - strand, within ponA at 780.146 kb on + strand, within ponA at 780.157 kb on - strand, within ponA at 780.177 kb on + strand, within ponA at 780.202 kb on + strand, within ponA at 780.210 kb on - strand, within ponA at 780.224 kb on + strand, within ponA at 780.237 kb on - strand, within ponA at 780.242 kb on + strand at 780.263 kb on + strand, within ponA at 780.271 kb on - strand, within ponA at 780.272 kb on - strand, within ponA at 780.281 kb on - strand, within ponA at 780.288 kb on + strand, within ponA at 780.288 kb on + strand, within ponA at 780.296 kb on - strand, within ponA at 780.296 kb on - strand, within ponA at 780.321 kb on - strand, within ponA at 780.335 kb on - strand, within ponA at 780.357 kb on + strand, within ponA at 780.357 kb on + strand, within ponA at 780.357 kb on + strand, within ponA at 780.365 kb on - strand, within ponA at 780.365 kb on - strand, within ponA at 780.365 kb on - strand, within ponA at 780.365 kb on - strand, within ponA at 780.365 kb on - strand, within ponA at 780.367 kb on + strand, within ponA at 780.367 kb on + strand, within ponA at 780.367 kb on + strand, within ponA at 780.367 kb on + strand, within ponA at 780.367 kb on + strand, within ponA at 780.375 kb on - strand, within ponA at 780.375 kb on - strand, within ponA at 780.375 kb on - strand, within ponA at 780.375 kb on - strand, within ponA at 780.379 kb on + strand, within ponA at 780.385 kb on - strand, within ponA at 780.386 kb on - strand, within ponA at 780.386 kb on - strand, within ponA at 780.389 kb on + strand, within ponA at 780.389 kb on + strand, within ponA at 780.389 kb on + strand, within ponA at 780.389 kb on + strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.397 kb on - strand, within ponA at 780.407 kb on - strand, within ponA at 780.412 kb on + strand, within ponA at 780.435 kb on - strand, within ponA at 780.443 kb on + strand, within ponA at 780.445 kb on - strand, within ponA at 780.466 kb on - strand, within ponA at 780.471 kb on + strand, within ponA at 780.478 kb on + strand, within ponA at 780.515 kb on + strand, within ponA at 780.515 kb on + strand, within ponA at 780.567 kb on + strand, within ponA at 780.600 kb on + strand, within ponA at 780.601 kb on - strand, within ponA at 780.629 kb on + strand, within ponA at 780.629 kb on + strand, within ponA at 780.637 kb on - strand, within ponA at 780.647 kb on - strand, within ponA at 780.672 kb on + strand, within ponA at 780.672 kb on + strand, within ponA at 780.677 kb on + strand, within ponA at 780.680 kb on - strand, within ponA at 780.680 kb on - strand, within ponA at 780.685 kb on - strand, within ponA at 780.697 kb on - strand, within ponA at 780.732 kb on - strand, within ponA at 780.752 kb on - strand at 780.759 kb on + strand, within ponA at 780.759 kb on + strand, within ponA at 780.759 kb on + strand, within ponA at 780.759 kb on + strand, within ponA at 780.759 kb on + strand, within ponA at 780.767 kb on - strand, within ponA at 780.767 kb on - strand, within ponA at 780.767 kb on - strand, within ponA at 780.767 kb on - strand, within ponA at 780.767 kb on - strand, within ponA at 780.772 kb on - strand at 780.772 kb on - strand, within ponA at 780.772 kb on - strand, within ponA at 780.842 kb on + strand, within ponA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 778,545 - +3.1 778,547 - +1.1 778,573 - +1.3 778,575 + -0.4 778,575 + -0.0 778,580 + -2.1 778,583 - +1.2 778,583 - +2.1 778,610 - -1.4 778,612 + -0.7 778,622 - +1.1 779,280 - -0.9 779,284 + -0.2 779,297 - +0.4 779,307 - +0.1 779,312 - -1.9 779,314 + -0.0 779,322 - -0.6 779,322 - -0.6 779,322 - -0.2 779,324 + -0.6 779,326 + +0.4 779,348 - -1.7 779,353 - -0.4 779,357 + -0.3 779,369 + +0.8 779,398 - -1.1 779,447 + -0.0 779,455 - -0.6 779,491 + +0.2 779,497 - +0.3 779,499 - +1.4 779,515 - +0.2 779,531 + -1.1 779,539 - -0.3 779,555 + -0.1 779,563 - Synpcc7942_0784 0.10 -1.6 779,581 + Synpcc7942_0784 0.16 -1.9 779,604 + Synpcc7942_0784 0.23 -1.2 779,612 + Synpcc7942_0784 0.25 -1.1 779,612 + Synpcc7942_0784 0.25 -1.2 779,619 - Synpcc7942_0784 0.28 -2.6 779,620 - Synpcc7942_0784 0.28 -0.9 779,653 + +1.5 779,742 + Synpcc7942_0784 0.66 -0.4 779,745 - Synpcc7942_0784 0.67 -0.7 779,750 - Synpcc7942_0784 0.69 +0.1 779,756 - Synpcc7942_0784 0.71 -0.4 779,791 + -3.0 779,822 - +1.1 779,822 - -0.6 779,843 + -0.1 779,850 - -0.1 779,895 - -0.4 779,896 - -0.4 779,923 - +0.1 779,944 + -0.5 779,964 - +0.3 779,968 - -0.5 779,982 + +0.7 780,003 - ponA Synpcc7942_0785 0.10 -0.4 780,015 + ponA Synpcc7942_0785 0.11 -0.1 780,020 + ponA Synpcc7942_0785 0.11 +0.5 780,020 + -0.2 780,025 + ponA Synpcc7942_0785 0.11 -1.0 780,028 - ponA Synpcc7942_0785 0.12 -0.4 780,028 - ponA Synpcc7942_0785 0.12 -1.2 780,028 - ponA Synpcc7942_0785 0.12 -0.1 780,038 - ponA Synpcc7942_0785 0.12 -1.1 780,051 - ponA Synpcc7942_0785 0.13 -0.8 780,061 + ponA Synpcc7942_0785 0.13 -0.7 780,061 - ponA Synpcc7942_0785 0.13 -0.7 780,065 + ponA Synpcc7942_0785 0.13 -0.2 780,071 + ponA Synpcc7942_0785 0.14 -0.1 780,073 - ponA Synpcc7942_0785 0.14 +1.3 780,075 + ponA Synpcc7942_0785 0.14 -0.8 780,076 + ponA Synpcc7942_0785 0.14 -0.7 780,084 + ponA Synpcc7942_0785 0.14 -0.5 780,096 - ponA Synpcc7942_0785 0.15 -0.2 780,098 - ponA Synpcc7942_0785 0.15 -0.2 780,099 - ponA Synpcc7942_0785 0.15 -0.6 780,141 - ponA Synpcc7942_0785 0.17 -1.3 780,146 + ponA Synpcc7942_0785 0.17 -1.7 780,157 - ponA Synpcc7942_0785 0.18 +0.3 780,177 + ponA Synpcc7942_0785 0.19 +0.0 780,202 + ponA Synpcc7942_0785 0.20 +1.3 780,210 - ponA Synpcc7942_0785 0.20 -0.7 780,224 + ponA Synpcc7942_0785 0.21 +0.2 780,237 - ponA Synpcc7942_0785 0.21 +1.1 780,242 + +0.3 780,263 + ponA Synpcc7942_0785 0.23 -1.2 780,271 - ponA Synpcc7942_0785 0.23 +0.1 780,272 - ponA Synpcc7942_0785 0.23 +0.6 780,281 - ponA Synpcc7942_0785 0.23 -0.7 780,288 + ponA Synpcc7942_0785 0.24 +0.1 780,288 + ponA Synpcc7942_0785 0.24 +0.8 780,296 - ponA Synpcc7942_0785 0.24 -0.9 780,296 - ponA Synpcc7942_0785 0.24 -1.2 780,321 - ponA Synpcc7942_0785 0.25 +0.5 780,335 - ponA Synpcc7942_0785 0.26 -0.7 780,357 + ponA Synpcc7942_0785 0.27 -0.1 780,357 + ponA Synpcc7942_0785 0.27 -0.8 780,357 + ponA Synpcc7942_0785 0.27 +0.4 780,365 - ponA Synpcc7942_0785 0.27 -0.1 780,365 - ponA Synpcc7942_0785 0.27 -2.1 780,365 - ponA Synpcc7942_0785 0.27 -0.5 780,365 - ponA Synpcc7942_0785 0.27 +0.3 780,365 - ponA Synpcc7942_0785 0.27 -0.7 780,367 + ponA Synpcc7942_0785 0.27 +0.7 780,367 + ponA Synpcc7942_0785 0.27 -1.7 780,367 + ponA Synpcc7942_0785 0.27 +0.9 780,367 + ponA Synpcc7942_0785 0.27 -0.2 780,367 + ponA Synpcc7942_0785 0.27 +0.6 780,375 - ponA Synpcc7942_0785 0.28 -0.4 780,375 - ponA Synpcc7942_0785 0.28 -1.4 780,375 - ponA Synpcc7942_0785 0.28 -2.4 780,375 - ponA Synpcc7942_0785 0.28 -2.6 780,379 + ponA Synpcc7942_0785 0.28 -1.5 780,385 - ponA Synpcc7942_0785 0.28 +0.3 780,386 - ponA Synpcc7942_0785 0.28 -0.9 780,386 - ponA Synpcc7942_0785 0.28 +0.5 780,389 + ponA Synpcc7942_0785 0.28 +0.3 780,389 + ponA Synpcc7942_0785 0.28 +0.0 780,389 + ponA Synpcc7942_0785 0.28 +0.8 780,389 + ponA Synpcc7942_0785 0.28 +0.6 780,397 - ponA Synpcc7942_0785 0.29 +1.5 780,397 - ponA Synpcc7942_0785 0.29 +0.3 780,397 - ponA Synpcc7942_0785 0.29 +1.3 780,397 - ponA Synpcc7942_0785 0.29 -0.4 780,397 - ponA Synpcc7942_0785 0.29 -0.6 780,397 - ponA Synpcc7942_0785 0.29 +0.6 780,397 - ponA Synpcc7942_0785 0.29 +0.6 780,397 - ponA Synpcc7942_0785 0.29 -0.5 780,407 - ponA Synpcc7942_0785 0.29 -0.7 780,412 + ponA Synpcc7942_0785 0.29 -1.3 780,435 - ponA Synpcc7942_0785 0.31 +0.9 780,443 + ponA Synpcc7942_0785 0.31 -0.3 780,445 - ponA Synpcc7942_0785 0.31 +1.3 780,466 - ponA Synpcc7942_0785 0.32 -0.1 780,471 + ponA Synpcc7942_0785 0.32 -1.5 780,478 + ponA Synpcc7942_0785 0.33 +0.4 780,515 + ponA Synpcc7942_0785 0.34 -0.6 780,515 + ponA Synpcc7942_0785 0.34 -0.1 780,567 + ponA Synpcc7942_0785 0.37 -0.7 780,600 + ponA Synpcc7942_0785 0.38 -0.3 780,601 - ponA Synpcc7942_0785 0.38 -0.8 780,629 + ponA Synpcc7942_0785 0.40 -0.6 780,629 + ponA Synpcc7942_0785 0.40 +0.4 780,637 - ponA Synpcc7942_0785 0.40 -1.3 780,647 - ponA Synpcc7942_0785 0.40 +0.8 780,672 + ponA Synpcc7942_0785 0.42 -0.4 780,672 + ponA Synpcc7942_0785 0.42 -0.2 780,677 + ponA Synpcc7942_0785 0.42 +0.8 780,680 - ponA Synpcc7942_0785 0.42 +2.1 780,680 - ponA Synpcc7942_0785 0.42 -0.1 780,685 - ponA Synpcc7942_0785 0.42 +0.8 780,697 - ponA Synpcc7942_0785 0.43 +0.4 780,732 - ponA Synpcc7942_0785 0.44 +0.1 780,752 - +0.1 780,759 + ponA Synpcc7942_0785 0.46 -1.2 780,759 + ponA Synpcc7942_0785 0.46 -1.3 780,759 + ponA Synpcc7942_0785 0.46 -1.5 780,759 + ponA Synpcc7942_0785 0.46 -0.2 780,759 + ponA Synpcc7942_0785 0.46 +0.1 780,767 - ponA Synpcc7942_0785 0.46 +0.7 780,767 - ponA Synpcc7942_0785 0.46 +2.4 780,767 - ponA Synpcc7942_0785 0.46 +0.4 780,767 - ponA Synpcc7942_0785 0.46 +0.9 780,767 - ponA Synpcc7942_0785 0.46 +0.0 780,772 - +1.1 780,772 - ponA Synpcc7942_0785 0.46 -0.1 780,772 - ponA Synpcc7942_0785 0.46 -2.2 780,842 + ponA Synpcc7942_0785 0.50 -0.7
Or see this region's nucleotide sequence