Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sat and Synpcc7942_0296 are separated by 145 nucleotides Synpcc7942_0296 and ftsH are separated by 106 nucleotides
Synpcc7942_0295: sat - sulfate adenylyltransferase, at 291,417 to 292,604
sat
Synpcc7942_0296: Synpcc7942_0296 - hypothetical protein, at 292,750 to 294,765
_0296
Synpcc7942_0297: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 294,872 to 296,713
ftsH
Position (kb) 292
293
294
295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 292.079 kb on + strand, within sat at 292.089 kb on + strand, within sat at 292.570 kb on - strand at 292.594 kb on + strand at 292.610 kb on + strand at 292.618 kb on - strand at 292.620 kb on - strand at 292.729 kb on + strand at 292.741 kb on + strand at 293.045 kb on + strand, within Synpcc7942_0296 at 293.157 kb on - strand, within Synpcc7942_0296 at 293.252 kb on + strand, within Synpcc7942_0296 at 293.271 kb on - strand, within Synpcc7942_0296 at 293.271 kb on - strand, within Synpcc7942_0296 at 293.354 kb on - strand, within Synpcc7942_0296 at 293.415 kb on + strand, within Synpcc7942_0296 at 293.423 kb on - strand, within Synpcc7942_0296 at 293.612 kb on - strand, within Synpcc7942_0296 at 293.628 kb on - strand, within Synpcc7942_0296 at 293.642 kb on - strand, within Synpcc7942_0296 at 293.657 kb on - strand, within Synpcc7942_0296 at 293.871 kb on + strand, within Synpcc7942_0296 at 293.939 kb on + strand, within Synpcc7942_0296 at 294.064 kb on - strand, within Synpcc7942_0296 at 294.142 kb on + strand, within Synpcc7942_0296 at 294.153 kb on + strand, within Synpcc7942_0296 at 294.161 kb on - strand, within Synpcc7942_0296 at 294.236 kb on - strand, within Synpcc7942_0296 at 294.390 kb on - strand, within Synpcc7942_0296 at 294.393 kb on + strand, within Synpcc7942_0296 at 294.403 kb on + strand, within Synpcc7942_0296 at 294.475 kb on + strand, within Synpcc7942_0296 at 294.483 kb on - strand, within Synpcc7942_0296 at 294.612 kb on + strand at 294.620 kb on - strand at 294.669 kb on - strand at 294.682 kb on + strand at 294.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 292,079 + sat Synpcc7942_0295 0.56 -1.0 292,089 + sat Synpcc7942_0295 0.57 +1.0 292,570 - +5.1 292,594 + -0.6 292,610 + -0.4 292,618 - -0.3 292,620 - +0.4 292,729 + +0.4 292,741 + -1.0 293,045 + Synpcc7942_0296 0.15 -2.4 293,157 - Synpcc7942_0296 0.20 -1.6 293,252 + Synpcc7942_0296 0.25 -0.5 293,271 - Synpcc7942_0296 0.26 -0.9 293,271 - Synpcc7942_0296 0.26 -1.5 293,354 - Synpcc7942_0296 0.30 -2.4 293,415 + Synpcc7942_0296 0.33 -1.3 293,423 - Synpcc7942_0296 0.33 -1.2 293,612 - Synpcc7942_0296 0.43 -1.3 293,628 - Synpcc7942_0296 0.44 -2.6 293,642 - Synpcc7942_0296 0.44 -1.0 293,657 - Synpcc7942_0296 0.45 -2.1 293,871 + Synpcc7942_0296 0.56 -0.8 293,939 + Synpcc7942_0296 0.59 +1.6 294,064 - Synpcc7942_0296 0.65 -3.1 294,142 + Synpcc7942_0296 0.69 +0.0 294,153 + Synpcc7942_0296 0.70 -1.3 294,161 - Synpcc7942_0296 0.70 +2.0 294,236 - Synpcc7942_0296 0.74 -0.2 294,390 - Synpcc7942_0296 0.81 +1.0 294,393 + Synpcc7942_0296 0.81 -1.1 294,403 + Synpcc7942_0296 0.82 -0.3 294,475 + Synpcc7942_0296 0.86 +1.4 294,483 - Synpcc7942_0296 0.86 -0.6 294,612 + +0.2 294,620 - -2.1 294,669 - -1.3 294,682 + -2.7 294,751 + -3.5
Or see this region's nucleotide sequence