Experiment: m.b. acetate 140 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04270 and PGA1_c04280 overlap by 1 nucleotides PGA1_c04280 and PGA1_c04290 are separated by 9 nucleotides PGA1_c04290 and PGA1_c04300 are separated by 23 nucleotides
PGA1_c04270: PGA1_c04270 - protein PhnJ, at 413,842 to 414,699
_c04270
PGA1_c04280: PGA1_c04280 - phosphonates transport ATP-binding protein PhnK, at 414,699 to 415,469
_c04280
PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162
_c04290
PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731
_c04300
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 413.710 kb on + strand at 413.725 kb on + strand at 413.730 kb on + strand at 413.733 kb on - strand at 413.777 kb on - strand at 413.777 kb on - strand at 413.848 kb on + strand at 413.920 kb on - strand at 413.965 kb on + strand, within PGA1_c04270 at 413.984 kb on - strand, within PGA1_c04270 at 413.987 kb on + strand, within PGA1_c04270 at 413.997 kb on - strand, within PGA1_c04270 at 414.002 kb on - strand, within PGA1_c04270 at 414.002 kb on - strand, within PGA1_c04270 at 414.059 kb on + strand, within PGA1_c04270 at 414.059 kb on + strand, within PGA1_c04270 at 414.060 kb on - strand, within PGA1_c04270 at 414.096 kb on + strand, within PGA1_c04270 at 414.137 kb on + strand, within PGA1_c04270 at 414.150 kb on - strand, within PGA1_c04270 at 414.186 kb on + strand, within PGA1_c04270 at 414.228 kb on - strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.331 kb on + strand, within PGA1_c04270 at 414.347 kb on - strand, within PGA1_c04270 at 414.411 kb on + strand, within PGA1_c04270 at 414.441 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.473 kb on - strand, within PGA1_c04270 at 414.473 kb on - strand, within PGA1_c04270 at 414.488 kb on - strand, within PGA1_c04270 at 414.531 kb on + strand, within PGA1_c04270 at 414.531 kb on + strand, within PGA1_c04270 at 414.544 kb on - strand, within PGA1_c04270 at 414.544 kb on - strand, within PGA1_c04270 at 414.573 kb on - strand, within PGA1_c04270 at 414.576 kb on - strand, within PGA1_c04270 at 414.734 kb on + strand at 414.734 kb on + strand at 414.734 kb on + strand at 414.734 kb on + strand at 414.742 kb on - strand at 414.757 kb on + strand at 414.762 kb on + strand at 414.762 kb on + strand at 414.762 kb on + strand at 414.765 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.792 kb on + strand, within PGA1_c04280 at 414.836 kb on + strand, within PGA1_c04280 at 414.841 kb on + strand, within PGA1_c04280 at 414.842 kb on - strand, within PGA1_c04280 at 414.844 kb on + strand, within PGA1_c04280 at 414.844 kb on + strand, within PGA1_c04280 at 414.850 kb on - strand, within PGA1_c04280 at 414.926 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.045 kb on - strand, within PGA1_c04280 at 415.078 kb on - strand, within PGA1_c04280 at 415.093 kb on + strand, within PGA1_c04280 at 415.093 kb on + strand, within PGA1_c04280 at 415.101 kb on - strand, within PGA1_c04280 at 415.218 kb on + strand, within PGA1_c04280 at 415.242 kb on - strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.299 kb on - strand, within PGA1_c04280 at 415.387 kb on + strand, within PGA1_c04280 at 415.400 kb on - strand at 415.435 kb on - strand at 415.463 kb on + strand at 415.507 kb on + strand at 415.507 kb on + strand at 415.520 kb on - strand at 415.592 kb on + strand, within PGA1_c04290 at 415.600 kb on - strand, within PGA1_c04290 at 415.679 kb on - strand, within PGA1_c04290 at 415.692 kb on - strand, within PGA1_c04290 at 415.699 kb on + strand, within PGA1_c04290 at 415.767 kb on + strand, within PGA1_c04290 at 415.778 kb on - strand, within PGA1_c04290 at 415.816 kb on - strand, within PGA1_c04290 at 415.852 kb on + strand, within PGA1_c04290 at 415.860 kb on - strand, within PGA1_c04290 at 415.869 kb on + strand, within PGA1_c04290 at 416.002 kb on + strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.062 kb on + strand, within PGA1_c04290 at 416.108 kb on + strand at 416.108 kb on + strand at 416.108 kb on + strand at 416.186 kb on - strand at 416.238 kb on + strand at 416.242 kb on + strand, within PGA1_c04300 at 416.248 kb on - strand, within PGA1_c04300 at 416.304 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.364 kb on + strand, within PGA1_c04300 at 416.372 kb on - strand, within PGA1_c04300 at 416.382 kb on - strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.392 kb on - strand, within PGA1_c04300 at 416.398 kb on - strand, within PGA1_c04300 at 416.442 kb on + strand, within PGA1_c04300 at 416.445 kb on - strand, within PGA1_c04300
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 140 mM remove 413,710 + -0.3 413,725 + +0.3 413,730 + -1.4 413,733 - -2.3 413,777 - +0.1 413,777 - -0.8 413,848 + +0.5 413,920 - -1.4 413,965 + PGA1_c04270 0.14 +1.1 413,984 - PGA1_c04270 0.17 +0.5 413,987 + PGA1_c04270 0.17 +0.0 413,997 - PGA1_c04270 0.18 +0.6 414,002 - PGA1_c04270 0.19 -1.4 414,002 - PGA1_c04270 0.19 +0.1 414,059 + PGA1_c04270 0.25 -0.3 414,059 + PGA1_c04270 0.25 -1.1 414,060 - PGA1_c04270 0.25 +0.5 414,096 + PGA1_c04270 0.30 +0.1 414,137 + PGA1_c04270 0.34 +0.5 414,150 - PGA1_c04270 0.36 +0.4 414,186 + PGA1_c04270 0.40 -0.8 414,228 - PGA1_c04270 0.45 +0.9 414,230 + PGA1_c04270 0.45 -0.5 414,230 + PGA1_c04270 0.45 +0.8 414,230 + PGA1_c04270 0.45 -0.4 414,230 + PGA1_c04270 0.45 -1.7 414,230 + PGA1_c04270 0.45 +0.1 414,230 + PGA1_c04270 0.45 -2.0 414,230 + PGA1_c04270 0.45 +0.6 414,230 + PGA1_c04270 0.45 -0.1 414,230 + PGA1_c04270 0.45 -0.5 414,230 + PGA1_c04270 0.45 +0.8 414,230 + PGA1_c04270 0.45 +0.6 414,230 + PGA1_c04270 0.45 +0.2 414,230 + PGA1_c04270 0.45 +0.1 414,230 + PGA1_c04270 0.45 +2.7 414,230 + PGA1_c04270 0.45 -0.1 414,230 + PGA1_c04270 0.45 +1.2 414,230 + PGA1_c04270 0.45 +0.5 414,230 + PGA1_c04270 0.45 -0.0 414,238 - PGA1_c04270 0.46 -0.2 414,238 - PGA1_c04270 0.46 +0.0 414,238 - PGA1_c04270 0.46 +0.9 414,238 - PGA1_c04270 0.46 +0.7 414,238 - PGA1_c04270 0.46 -2.0 414,238 - PGA1_c04270 0.46 +1.5 414,238 - PGA1_c04270 0.46 -1.0 414,238 - PGA1_c04270 0.46 -0.2 414,238 - PGA1_c04270 0.46 -2.1 414,238 - PGA1_c04270 0.46 -0.2 414,238 - PGA1_c04270 0.46 +2.5 414,238 - PGA1_c04270 0.46 +0.3 414,238 - PGA1_c04270 0.46 +1.7 414,238 - PGA1_c04270 0.46 -0.7 414,331 + PGA1_c04270 0.57 +0.6 414,347 - PGA1_c04270 0.59 +1.2 414,411 + PGA1_c04270 0.66 -1.0 414,441 + PGA1_c04270 0.70 +0.4 414,452 + PGA1_c04270 0.71 +0.4 414,452 + PGA1_c04270 0.71 +1.0 414,452 + PGA1_c04270 0.71 +2.5 414,460 - PGA1_c04270 0.72 -0.2 414,460 - PGA1_c04270 0.72 -0.1 414,460 - PGA1_c04270 0.72 +2.1 414,473 - PGA1_c04270 0.74 +1.4 414,473 - PGA1_c04270 0.74 -0.9 414,488 - PGA1_c04270 0.75 +1.4 414,531 + PGA1_c04270 0.80 +0.8 414,531 + PGA1_c04270 0.80 -0.0 414,544 - PGA1_c04270 0.82 -0.0 414,544 - PGA1_c04270 0.82 +0.0 414,573 - PGA1_c04270 0.85 -0.9 414,576 - PGA1_c04270 0.86 +0.4 414,734 + -0.6 414,734 + +0.9 414,734 + -0.3 414,734 + +1.8 414,742 - +1.1 414,757 + -1.9 414,762 + -0.0 414,762 + -1.9 414,762 + -2.6 414,765 - +0.4 414,770 - +1.3 414,770 - -0.3 414,770 - -0.7 414,770 - -0.6 414,770 - +1.0 414,770 - -0.3 414,770 - -0.0 414,770 - -0.8 414,792 + PGA1_c04280 0.12 -2.2 414,836 + PGA1_c04280 0.18 -0.8 414,841 + PGA1_c04280 0.18 -2.7 414,842 - PGA1_c04280 0.19 +0.9 414,844 + PGA1_c04280 0.19 -0.2 414,844 + PGA1_c04280 0.19 -0.7 414,850 - PGA1_c04280 0.20 -1.0 414,926 + PGA1_c04280 0.29 -0.0 414,960 + PGA1_c04280 0.34 -0.6 414,960 + PGA1_c04280 0.34 -0.5 414,960 + PGA1_c04280 0.34 +1.5 415,037 + PGA1_c04280 0.44 -0.7 415,037 + PGA1_c04280 0.44 -0.6 415,037 + PGA1_c04280 0.44 -0.5 415,045 - PGA1_c04280 0.45 -0.3 415,078 - PGA1_c04280 0.49 -0.0 415,093 + PGA1_c04280 0.51 -0.0 415,093 + PGA1_c04280 0.51 -0.3 415,101 - PGA1_c04280 0.52 +0.8 415,218 + PGA1_c04280 0.67 +0.1 415,242 - PGA1_c04280 0.70 -1.0 415,291 + PGA1_c04280 0.77 -0.7 415,291 + PGA1_c04280 0.77 +0.3 415,299 - PGA1_c04280 0.78 +1.3 415,387 + PGA1_c04280 0.89 -0.5 415,400 - +0.7 415,435 - +0.1 415,463 + -0.0 415,507 + -0.6 415,507 + -0.9 415,520 - -2.0 415,592 + PGA1_c04290 0.17 -0.2 415,600 - PGA1_c04290 0.18 +0.5 415,679 - PGA1_c04290 0.29 -0.9 415,692 - PGA1_c04290 0.31 +0.7 415,699 + PGA1_c04290 0.32 +0.3 415,767 + PGA1_c04290 0.42 +1.6 415,778 - PGA1_c04290 0.44 +1.3 415,816 - PGA1_c04290 0.49 +1.2 415,852 + PGA1_c04290 0.55 +0.8 415,860 - PGA1_c04290 0.56 +0.0 415,869 + PGA1_c04290 0.57 +0.3 416,002 + PGA1_c04290 0.76 +0.1 416,036 - PGA1_c04290 0.81 +0.8 416,036 - PGA1_c04290 0.81 +0.6 416,062 + PGA1_c04290 0.85 +0.5 416,108 + +1.0 416,108 + -1.0 416,108 + +1.0 416,186 - -2.1 416,238 + +0.5 416,242 + PGA1_c04300 0.10 -0.7 416,248 - PGA1_c04300 0.11 -1.0 416,304 + PGA1_c04300 0.22 +1.2 416,347 + PGA1_c04300 0.29 -2.0 416,347 + PGA1_c04300 0.29 +0.5 416,355 - PGA1_c04300 0.31 -1.7 416,355 - PGA1_c04300 0.31 +0.2 416,364 + PGA1_c04300 0.33 +1.1 416,372 - PGA1_c04300 0.34 +1.0 416,382 - PGA1_c04300 0.36 -0.8 416,384 + PGA1_c04300 0.36 -0.0 416,384 + PGA1_c04300 0.36 -0.2 416,384 + PGA1_c04300 0.36 +0.0 416,384 + PGA1_c04300 0.36 -0.2 416,384 + PGA1_c04300 0.36 +1.3 416,390 + PGA1_c04300 0.37 +0.2 416,390 + PGA1_c04300 0.37 -1.0 416,390 + PGA1_c04300 0.37 +0.2 416,390 + PGA1_c04300 0.37 -0.9 416,390 + PGA1_c04300 0.37 +1.0 416,392 - PGA1_c04300 0.38 +0.1 416,398 - PGA1_c04300 0.39 -0.9 416,442 + PGA1_c04300 0.47 -0.4 416,445 - PGA1_c04300 0.47 -0.3
Or see this region's nucleotide sequence