Experiment: m.b. acetate 140 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02000 and PGA1_262p02010 are separated by 269 nucleotides PGA1_262p02010 and PGA1_262p02020 are separated by 309 nucleotides
PGA1_262p02000: PGA1_262p02000 - putative transcriptional regulator, LysR type, at 218,693 to 219,550
_262p02000
PGA1_262p02010: PGA1_262p02010 - Uncharacterized conserved protein, at 219,820 to 220,068
_262p02010
PGA1_262p02020: PGA1_262p02020 - putative integrase, at 220,378 to 221,682
_262p02020
Position (kb) 219
220
221 Strain fitness (log2 ratio) -1
0
1
2 at 218.860 kb on - strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.916 kb on - strand, within PGA1_262p02000 at 218.928 kb on + strand, within PGA1_262p02000 at 218.929 kb on - strand, within PGA1_262p02000 at 218.951 kb on - strand, within PGA1_262p02000 at 219.070 kb on - strand, within PGA1_262p02000 at 219.074 kb on + strand, within PGA1_262p02000 at 219.118 kb on + strand, within PGA1_262p02000 at 219.402 kb on + strand, within PGA1_262p02000 at 219.416 kb on + strand, within PGA1_262p02000 at 219.480 kb on + strand at 219.480 kb on + strand at 219.480 kb on + strand at 219.488 kb on - strand at 219.488 kb on - strand at 219.585 kb on - strand at 219.585 kb on - strand at 219.595 kb on + strand at 219.626 kb on + strand at 219.632 kb on - strand at 219.640 kb on + strand at 219.667 kb on + strand at 219.667 kb on + strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.698 kb on - strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.782 kb on + strand at 219.788 kb on - strand at 219.788 kb on - strand at 219.810 kb on + strand at 219.845 kb on - strand, within PGA1_262p02010 at 219.896 kb on - strand, within PGA1_262p02010 at 219.961 kb on - strand, within PGA1_262p02010 at 220.010 kb on + strand, within PGA1_262p02010
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 140 mM remove 218,860 - PGA1_262p02000 0.19 +0.3 218,908 + PGA1_262p02000 0.25 +0.0 218,908 + PGA1_262p02000 0.25 -0.5 218,916 - PGA1_262p02000 0.26 +0.1 218,928 + PGA1_262p02000 0.27 -0.9 218,929 - PGA1_262p02000 0.28 +0.4 218,951 - PGA1_262p02000 0.30 -0.6 219,070 - PGA1_262p02000 0.44 -0.0 219,074 + PGA1_262p02000 0.44 +1.2 219,118 + PGA1_262p02000 0.50 +0.5 219,402 + PGA1_262p02000 0.83 -0.3 219,416 + PGA1_262p02000 0.84 -1.3 219,480 + -0.4 219,480 + +1.0 219,480 + -0.2 219,488 - -0.0 219,488 - +1.2 219,585 - +0.9 219,585 - +0.1 219,595 + -0.1 219,626 + +0.4 219,632 - -0.0 219,640 + +0.9 219,667 + +1.8 219,667 + +1.1 219,675 - +0.5 219,675 - +0.0 219,675 - +0.7 219,698 - -0.7 219,780 + -0.7 219,780 + +0.5 219,780 + +0.2 219,780 + -0.4 219,782 + -0.4 219,788 - +0.4 219,788 - -0.0 219,810 + -1.5 219,845 - PGA1_262p02010 0.10 -0.4 219,896 - PGA1_262p02010 0.31 +0.7 219,961 - PGA1_262p02010 0.57 +2.1 220,010 + PGA1_262p02010 0.76 +0.8
Or see this region's nucleotide sequence