Experiment: m.b. acetate 140 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00730 and PGA1_262p00740 overlap by 9 nucleotides PGA1_262p00740 and PGA1_262p00750 overlap by 8 nucleotides
PGA1_262p00730: PGA1_262p00730 - putative signal transduction histidine kinase, at 82,225 to 83,316
_262p00730
PGA1_262p00740: PGA1_262p00740 - putative peptidase, family M20/M25/M40, at 83,308 to 84,435
_262p00740
PGA1_262p00750: PGA1_262p00750 - Threonine dehydratase, at 84,428 to 85,453
_262p00750
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.465 kb on - strand, within PGA1_262p00730 at 83.008 kb on + strand, within PGA1_262p00730 at 83.057 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.381 kb on + strand at 83.489 kb on + strand, within PGA1_262p00740 at 83.489 kb on + strand, within PGA1_262p00740 at 83.491 kb on + strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.547 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.617 kb on - strand, within PGA1_262p00740 at 83.660 kb on - strand, within PGA1_262p00740 at 83.869 kb on - strand, within PGA1_262p00740 at 83.971 kb on + strand, within PGA1_262p00740 at 84.125 kb on - strand, within PGA1_262p00740 at 84.189 kb on - strand, within PGA1_262p00740 at 84.251 kb on - strand, within PGA1_262p00740 at 84.291 kb on - strand, within PGA1_262p00740 at 84.331 kb on + strand at 84.569 kb on - strand, within PGA1_262p00750 at 84.629 kb on - strand, within PGA1_262p00750 at 84.738 kb on - strand, within PGA1_262p00750 at 84.813 kb on + strand, within PGA1_262p00750 at 84.915 kb on - strand, within PGA1_262p00750 at 85.055 kb on - strand, within PGA1_262p00750 at 85.273 kb on + strand, within PGA1_262p00750 at 85.390 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 140 mM remove 82,465 - PGA1_262p00730 0.22 +1.1 83,008 + PGA1_262p00730 0.72 +1.0 83,057 + PGA1_262p00730 0.76 -1.7 83,066 + PGA1_262p00730 0.77 +1.0 83,066 + PGA1_262p00730 0.77 -1.5 83,381 + +0.1 83,489 + PGA1_262p00740 0.16 +1.3 83,489 + PGA1_262p00740 0.16 -0.4 83,491 + PGA1_262p00740 0.16 -0.7 83,497 - PGA1_262p00740 0.17 +1.9 83,497 - PGA1_262p00740 0.17 +0.8 83,547 - PGA1_262p00740 0.21 -0.5 83,588 - PGA1_262p00740 0.25 +0.2 83,588 - PGA1_262p00740 0.25 -0.9 83,617 - PGA1_262p00740 0.27 +0.1 83,660 - PGA1_262p00740 0.31 +0.2 83,869 - PGA1_262p00740 0.50 -1.8 83,971 + PGA1_262p00740 0.59 -0.0 84,125 - PGA1_262p00740 0.72 +0.7 84,189 - PGA1_262p00740 0.78 +0.5 84,251 - PGA1_262p00740 0.84 -0.6 84,291 - PGA1_262p00740 0.87 +0.3 84,331 + +0.3 84,569 - PGA1_262p00750 0.14 +0.1 84,629 - PGA1_262p00750 0.20 +0.8 84,738 - PGA1_262p00750 0.30 +0.2 84,813 + PGA1_262p00750 0.38 +0.2 84,915 - PGA1_262p00750 0.47 -0.0 85,055 - PGA1_262p00750 0.61 +0.2 85,273 + PGA1_262p00750 0.82 -0.0 85,390 + +1.6 85,392 + +0.3 85,392 + +0.6 85,392 + -0.3 85,392 + +0.6 85,400 - -1.3
Or see this region's nucleotide sequence