Experiment: m.b. acetate 140 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00580 and PGA1_262p00590 are separated by 34 nucleotides PGA1_262p00590 and PGA1_262p00600 overlap by 4 nucleotides
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
PGA1_262p00590: PGA1_262p00590 - Protein of unknown function (DUF2886)., at 68,198 to 68,857
_262p00590
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
Position (kb) 68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 67.205 kb on - strand, within PGA1_262p00580 at 67.234 kb on + strand, within PGA1_262p00580 at 67.240 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.738 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.101 kb on - strand at 68.197 kb on + strand at 68.208 kb on + strand at 68.322 kb on - strand, within PGA1_262p00590 at 68.423 kb on - strand, within PGA1_262p00590 at 68.643 kb on - strand, within PGA1_262p00590 at 68.709 kb on - strand, within PGA1_262p00590 at 68.742 kb on - strand, within PGA1_262p00590 at 68.771 kb on + strand, within PGA1_262p00590 at 68.798 kb on - strand at 68.850 kb on + strand at 68.892 kb on + strand at 68.956 kb on + strand at 68.982 kb on - strand at 69.035 kb on + strand at 69.043 kb on - strand at 69.189 kb on + strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.298 kb on - strand, within PGA1_262p00600 at 69.367 kb on + strand, within PGA1_262p00600 at 69.488 kb on + strand, within PGA1_262p00600 at 69.502 kb on - strand, within PGA1_262p00600 at 69.507 kb on - strand, within PGA1_262p00600 at 69.509 kb on + strand, within PGA1_262p00600 at 69.530 kb on + strand, within PGA1_262p00600 at 69.738 kb on - strand, within PGA1_262p00600 at 69.760 kb on - strand, within PGA1_262p00600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 140 mM remove 67,205 - PGA1_262p00580 0.30 -0.6 67,234 + PGA1_262p00580 0.32 +0.5 67,240 - PGA1_262p00580 0.33 -1.8 67,368 - PGA1_262p00580 0.42 +0.1 67,368 - PGA1_262p00580 0.42 +0.6 67,738 - PGA1_262p00580 0.69 -1.3 67,875 - PGA1_262p00580 0.79 -1.1 67,875 - PGA1_262p00580 0.79 +0.6 67,875 - PGA1_262p00580 0.79 -0.2 68,008 - PGA1_262p00580 0.89 +1.1 68,008 - PGA1_262p00580 0.89 +0.7 68,101 - -0.0 68,197 + -1.0 68,208 + -0.1 68,322 - PGA1_262p00590 0.19 -0.7 68,423 - PGA1_262p00590 0.34 +0.4 68,643 - PGA1_262p00590 0.67 +1.6 68,709 - PGA1_262p00590 0.77 +0.4 68,742 - PGA1_262p00590 0.82 -0.2 68,771 + PGA1_262p00590 0.87 +0.9 68,798 - -0.9 68,850 + +0.4 68,892 + +1.3 68,956 + -0.4 68,982 - +0.3 69,035 + -0.2 69,043 - -0.3 69,189 + PGA1_262p00600 0.16 -0.4 69,293 - PGA1_262p00600 0.21 -0.0 69,293 - PGA1_262p00600 0.21 +1.7 69,293 - PGA1_262p00600 0.21 -0.1 69,298 - PGA1_262p00600 0.21 -0.2 69,367 + PGA1_262p00600 0.24 -0.4 69,488 + PGA1_262p00600 0.30 -0.9 69,502 - PGA1_262p00600 0.30 +0.8 69,507 - PGA1_262p00600 0.31 -0.8 69,509 + PGA1_262p00600 0.31 -0.5 69,530 + PGA1_262p00600 0.32 +1.3 69,738 - PGA1_262p00600 0.42 -0.0 69,760 - PGA1_262p00600 0.43 -0.6
Or see this region's nucleotide sequence