Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00060

Experiment: m.b. acetate 140 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00050 and PGA1_262p00060 overlap by 8 nucleotidesPGA1_262p00060 and PGA1_262p00070 overlap by 17 nucleotides PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679 _262p00050 PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988 _262p00060 PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258 _262p00070 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.846 kb on - strand, within PGA1_262p00050at 6.031 kb on + strand, within PGA1_262p00050at 6.039 kb on - strand, within PGA1_262p00050at 6.088 kb on + strand, within PGA1_262p00050at 6.137 kb on + strand, within PGA1_262p00050at 6.139 kb on + strand, within PGA1_262p00050at 6.287 kb on + strand, within PGA1_262p00050at 6.295 kb on - strand, within PGA1_262p00050at 6.340 kb on + strand, within PGA1_262p00050at 6.347 kb on - strand, within PGA1_262p00050at 6.374 kb on - strand, within PGA1_262p00050at 6.420 kb on + strand, within PGA1_262p00050at 6.428 kb on - strand, within PGA1_262p00050at 6.774 kb on + strandat 6.972 kb on - strand, within PGA1_262p00060at 6.979 kb on + strand, within PGA1_262p00060at 6.993 kb on - strand, within PGA1_262p00060at 7.096 kb on + strand, within PGA1_262p00060at 7.263 kb on - strand, within PGA1_262p00060at 7.297 kb on - strand, within PGA1_262p00060at 7.772 kb on + strand, within PGA1_262p00060at 7.813 kb on + strand, within PGA1_262p00060at 7.909 kb on - strandat 7.932 kb on + strandat 7.973 kb on - strandat 7.990 kb on - strandat 8.050 kb on - strandat 8.166 kb on - strand, within PGA1_262p00070at 8.231 kb on + strand, within PGA1_262p00070at 8.262 kb on + strand, within PGA1_262p00070at 8.287 kb on - strand, within PGA1_262p00070at 8.394 kb on + strand, within PGA1_262p00070at 8.408 kb on + strand, within PGA1_262p00070at 8.481 kb on - strand, within PGA1_262p00070at 8.481 kb on - strand, within PGA1_262p00070at 8.516 kb on - strand, within PGA1_262p00070at 8.895 kb on + strand, within PGA1_262p00070at 8.914 kb on + strand, within PGA1_262p00070at 8.922 kb on - strand, within PGA1_262p00070at 8.926 kb on + strand, within PGA1_262p00070at 8.981 kb on + strand, within PGA1_262p00070at 8.984 kb on + strand, within PGA1_262p00070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 140 mM
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5,846 - PGA1_262p00050 0.35 +0.5
6,031 + PGA1_262p00050 0.49 -0.3
6,039 - PGA1_262p00050 0.50 -0.3
6,088 + PGA1_262p00050 0.54 -1.1
6,137 + PGA1_262p00050 0.58 -0.6
6,139 + PGA1_262p00050 0.58 -3.0
6,287 + PGA1_262p00050 0.69 -0.6
6,295 - PGA1_262p00050 0.70 -0.1
6,340 + PGA1_262p00050 0.73 +1.4
6,347 - PGA1_262p00050 0.74 -0.9
6,374 - PGA1_262p00050 0.76 -1.1
6,420 + PGA1_262p00050 0.80 +0.7
6,428 - PGA1_262p00050 0.80 -1.4
6,774 + -0.5
6,972 - PGA1_262p00060 0.23 -0.3
6,979 + PGA1_262p00060 0.23 -1.0
6,993 - PGA1_262p00060 0.24 +1.5
7,096 + PGA1_262p00060 0.32 +1.8
7,263 - PGA1_262p00060 0.45 +0.4
7,297 - PGA1_262p00060 0.47 +0.9
7,772 + PGA1_262p00060 0.84 -0.2
7,813 + PGA1_262p00060 0.87 -1.2
7,909 - -0.2
7,932 + +0.4
7,973 - -0.0
7,990 - -0.0
8,050 - +0.5
8,166 - PGA1_262p00070 0.15 +0.1
8,231 + PGA1_262p00070 0.20 -1.3
8,262 + PGA1_262p00070 0.23 -1.2
8,287 - PGA1_262p00070 0.24 +0.1
8,394 + PGA1_262p00070 0.33 -0.2
8,408 + PGA1_262p00070 0.34 +0.7
8,481 - PGA1_262p00070 0.40 -0.1
8,481 - PGA1_262p00070 0.40 +0.3
8,516 - PGA1_262p00070 0.42 -0.1
8,895 + PGA1_262p00070 0.72 +0.0
8,914 + PGA1_262p00070 0.73 -0.4
8,922 - PGA1_262p00070 0.74 +0.5
8,926 + PGA1_262p00070 0.74 +1.6
8,981 + PGA1_262p00070 0.78 -1.8
8,984 + PGA1_262p00070 0.79 +1.2

Or see this region's nucleotide sequence