Experiment: m.b. acetate 140 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00050 and PGA1_262p00060 overlap by 8 nucleotides PGA1_262p00060 and PGA1_262p00070 overlap by 17 nucleotides
PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679
_262p00050
PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988
_262p00060
PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258
_262p00070
Position (kb)
6
7
8 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5.846 kb on - strand, within PGA1_262p00050 at 6.031 kb on + strand, within PGA1_262p00050 at 6.039 kb on - strand, within PGA1_262p00050 at 6.088 kb on + strand, within PGA1_262p00050 at 6.137 kb on + strand, within PGA1_262p00050 at 6.139 kb on + strand, within PGA1_262p00050 at 6.287 kb on + strand, within PGA1_262p00050 at 6.295 kb on - strand, within PGA1_262p00050 at 6.340 kb on + strand, within PGA1_262p00050 at 6.347 kb on - strand, within PGA1_262p00050 at 6.374 kb on - strand, within PGA1_262p00050 at 6.420 kb on + strand, within PGA1_262p00050 at 6.428 kb on - strand, within PGA1_262p00050 at 6.774 kb on + strand at 6.972 kb on - strand, within PGA1_262p00060 at 6.979 kb on + strand, within PGA1_262p00060 at 6.993 kb on - strand, within PGA1_262p00060 at 7.096 kb on + strand, within PGA1_262p00060 at 7.263 kb on - strand, within PGA1_262p00060 at 7.297 kb on - strand, within PGA1_262p00060 at 7.772 kb on + strand, within PGA1_262p00060 at 7.813 kb on + strand, within PGA1_262p00060 at 7.909 kb on - strand at 7.932 kb on + strand at 7.973 kb on - strand at 7.990 kb on - strand at 8.050 kb on - strand at 8.166 kb on - strand, within PGA1_262p00070 at 8.231 kb on + strand, within PGA1_262p00070 at 8.262 kb on + strand, within PGA1_262p00070 at 8.287 kb on - strand, within PGA1_262p00070 at 8.394 kb on + strand, within PGA1_262p00070 at 8.408 kb on + strand, within PGA1_262p00070 at 8.481 kb on - strand, within PGA1_262p00070 at 8.481 kb on - strand, within PGA1_262p00070 at 8.516 kb on - strand, within PGA1_262p00070 at 8.895 kb on + strand, within PGA1_262p00070 at 8.914 kb on + strand, within PGA1_262p00070 at 8.922 kb on - strand, within PGA1_262p00070 at 8.926 kb on + strand, within PGA1_262p00070 at 8.981 kb on + strand, within PGA1_262p00070 at 8.984 kb on + strand, within PGA1_262p00070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 140 mM remove 5,846 - PGA1_262p00050 0.35 +0.5 6,031 + PGA1_262p00050 0.49 -0.3 6,039 - PGA1_262p00050 0.50 -0.3 6,088 + PGA1_262p00050 0.54 -1.1 6,137 + PGA1_262p00050 0.58 -0.6 6,139 + PGA1_262p00050 0.58 -3.0 6,287 + PGA1_262p00050 0.69 -0.6 6,295 - PGA1_262p00050 0.70 -0.1 6,340 + PGA1_262p00050 0.73 +1.4 6,347 - PGA1_262p00050 0.74 -0.9 6,374 - PGA1_262p00050 0.76 -1.1 6,420 + PGA1_262p00050 0.80 +0.7 6,428 - PGA1_262p00050 0.80 -1.4 6,774 + -0.5 6,972 - PGA1_262p00060 0.23 -0.3 6,979 + PGA1_262p00060 0.23 -1.0 6,993 - PGA1_262p00060 0.24 +1.5 7,096 + PGA1_262p00060 0.32 +1.8 7,263 - PGA1_262p00060 0.45 +0.4 7,297 - PGA1_262p00060 0.47 +0.9 7,772 + PGA1_262p00060 0.84 -0.2 7,813 + PGA1_262p00060 0.87 -1.2 7,909 - -0.2 7,932 + +0.4 7,973 - -0.0 7,990 - -0.0 8,050 - +0.5 8,166 - PGA1_262p00070 0.15 +0.1 8,231 + PGA1_262p00070 0.20 -1.3 8,262 + PGA1_262p00070 0.23 -1.2 8,287 - PGA1_262p00070 0.24 +0.1 8,394 + PGA1_262p00070 0.33 -0.2 8,408 + PGA1_262p00070 0.34 +0.7 8,481 - PGA1_262p00070 0.40 -0.1 8,481 - PGA1_262p00070 0.40 +0.3 8,516 - PGA1_262p00070 0.42 -0.1 8,895 + PGA1_262p00070 0.72 +0.0 8,914 + PGA1_262p00070 0.73 -0.4 8,922 - PGA1_262p00070 0.74 +0.5 8,926 + PGA1_262p00070 0.74 +1.6 8,981 + PGA1_262p00070 0.78 -1.8 8,984 + PGA1_262p00070 0.79 +1.2
Or see this region's nucleotide sequence