Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22070

Experiment: m.b. acetate 140 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22060 and PGA1_c22070 are separated by 86 nucleotidesPGA1_c22070 and PGA1_c22080 are separated by 9 nucleotides PGA1_c22060: PGA1_c22060 - Putative virion core protein (lumpy skin disease virus), at 2,286,715 to 2,287,893 _c22060 PGA1_c22070: PGA1_c22070 - Cytochrome B561, at 2,287,980 to 2,288,507 _c22070 PGA1_c22080: PGA1_c22080 - RNA polymerase I-specific transcription initiation factor Rrn7., at 2,288,517 to 2,289,668 _c22080 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -2 -1 0 1 2at 2287.160 kb on - strand, within PGA1_c22060at 2287.260 kb on + strand, within PGA1_c22060at 2287.277 kb on + strand, within PGA1_c22060at 2287.285 kb on - strand, within PGA1_c22060at 2287.285 kb on - strand, within PGA1_c22060at 2287.285 kb on - strand, within PGA1_c22060at 2287.290 kb on - strand, within PGA1_c22060at 2287.296 kb on + strand, within PGA1_c22060at 2287.327 kb on + strand, within PGA1_c22060at 2287.358 kb on - strand, within PGA1_c22060at 2287.413 kb on + strand, within PGA1_c22060at 2287.522 kb on + strand, within PGA1_c22060at 2287.782 kb on + strandat 2287.894 kb on + strandat 2287.904 kb on + strandat 2287.959 kb on - strandat 2287.967 kb on + strandat 2288.028 kb on - strandat 2288.028 kb on - strandat 2288.114 kb on + strand, within PGA1_c22070at 2288.117 kb on - strand, within PGA1_c22070at 2288.143 kb on - strand, within PGA1_c22070at 2288.163 kb on + strand, within PGA1_c22070at 2288.164 kb on - strand, within PGA1_c22070at 2288.182 kb on + strand, within PGA1_c22070at 2288.212 kb on + strand, within PGA1_c22070at 2288.276 kb on + strand, within PGA1_c22070at 2288.284 kb on - strand, within PGA1_c22070at 2288.329 kb on + strand, within PGA1_c22070at 2288.332 kb on - strand, within PGA1_c22070at 2288.394 kb on - strand, within PGA1_c22070at 2288.394 kb on - strand, within PGA1_c22070at 2288.464 kb on - strandat 2288.554 kb on + strandat 2288.626 kb on + strandat 2288.629 kb on - strandat 2288.673 kb on - strand, within PGA1_c22080at 2288.682 kb on + strand, within PGA1_c22080at 2288.716 kb on + strand, within PGA1_c22080at 2288.801 kb on - strand, within PGA1_c22080at 2288.872 kb on + strand, within PGA1_c22080at 2288.880 kb on - strand, within PGA1_c22080at 2288.984 kb on + strand, within PGA1_c22080at 2289.043 kb on + strand, within PGA1_c22080at 2289.173 kb on - strand, within PGA1_c22080at 2289.268 kb on + strand, within PGA1_c22080at 2289.277 kb on + strand, within PGA1_c22080at 2289.285 kb on - strand, within PGA1_c22080at 2289.322 kb on - strand, within PGA1_c22080at 2289.354 kb on - strand, within PGA1_c22080at 2289.354 kb on - strand, within PGA1_c22080at 2289.371 kb on - strand, within PGA1_c22080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 140 mM
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2,287,160 - PGA1_c22060 0.38 +1.4
2,287,260 + PGA1_c22060 0.46 -0.6
2,287,277 + PGA1_c22060 0.48 -0.0
2,287,285 - PGA1_c22060 0.48 -0.4
2,287,285 - PGA1_c22060 0.48 +2.2
2,287,285 - PGA1_c22060 0.48 -0.6
2,287,290 - PGA1_c22060 0.49 -1.4
2,287,296 + PGA1_c22060 0.49 -2.1
2,287,327 + PGA1_c22060 0.52 +0.8
2,287,358 - PGA1_c22060 0.55 -0.2
2,287,413 + PGA1_c22060 0.59 -0.6
2,287,522 + PGA1_c22060 0.68 -0.6
2,287,782 + -0.2
2,287,894 + +0.2
2,287,904 + +0.7
2,287,959 - -0.3
2,287,967 + +2.5
2,288,028 - -0.3
2,288,028 - -0.7
2,288,114 + PGA1_c22070 0.25 -1.1
2,288,117 - PGA1_c22070 0.26 +0.5
2,288,143 - PGA1_c22070 0.31 -0.6
2,288,163 + PGA1_c22070 0.35 -0.1
2,288,164 - PGA1_c22070 0.35 +1.3
2,288,182 + PGA1_c22070 0.38 -0.8
2,288,212 + PGA1_c22070 0.44 +1.3
2,288,276 + PGA1_c22070 0.56 +0.3
2,288,284 - PGA1_c22070 0.58 +1.4
2,288,329 + PGA1_c22070 0.66 -1.1
2,288,332 - PGA1_c22070 0.67 +0.2
2,288,394 - PGA1_c22070 0.78 +1.6
2,288,394 - PGA1_c22070 0.78 +1.3
2,288,464 - -0.3
2,288,554 + -0.5
2,288,626 + -0.5
2,288,629 - -0.9
2,288,673 - PGA1_c22080 0.14 -0.2
2,288,682 + PGA1_c22080 0.14 +1.2
2,288,716 + PGA1_c22080 0.17 -0.8
2,288,801 - PGA1_c22080 0.25 +2.0
2,288,872 + PGA1_c22080 0.31 -0.7
2,288,880 - PGA1_c22080 0.32 +0.2
2,288,984 + PGA1_c22080 0.41 -1.1
2,289,043 + PGA1_c22080 0.46 -2.3
2,289,173 - PGA1_c22080 0.57 +0.6
2,289,268 + PGA1_c22080 0.65 -0.3
2,289,277 + PGA1_c22080 0.66 +0.0
2,289,285 - PGA1_c22080 0.67 +1.2
2,289,322 - PGA1_c22080 0.70 -1.7
2,289,354 - PGA1_c22080 0.73 -2.2
2,289,354 - PGA1_c22080 0.73 -0.5
2,289,371 - PGA1_c22080 0.74 +0.8

Or see this region's nucleotide sequence