Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08590

Experiment: m.b. acetate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08580 and PGA1_c08590 are separated by 94 nucleotidesPGA1_c08590 and PGA1_c08600 overlap by 1 nucleotides PGA1_c08580: PGA1_c08580 - hypothetical protein, at 885,167 to 886,957 _c08580 PGA1_c08590: PGA1_c08590 - heme NO binding domain-containing protein, at 887,052 to 887,639 _c08590 PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640 _c08600 Position (kb) 887 888Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 886.061 kb on + strand, within PGA1_c08580at 886.069 kb on - strand, within PGA1_c08580at 886.097 kb on + strand, within PGA1_c08580at 886.147 kb on + strand, within PGA1_c08580at 886.243 kb on + strand, within PGA1_c08580at 886.249 kb on + strand, within PGA1_c08580at 886.355 kb on + strand, within PGA1_c08580at 886.355 kb on + strand, within PGA1_c08580at 886.377 kb on + strand, within PGA1_c08580at 886.435 kb on + strand, within PGA1_c08580at 886.443 kb on - strand, within PGA1_c08580at 886.502 kb on - strand, within PGA1_c08580at 886.502 kb on - strand, within PGA1_c08580at 886.542 kb on + strand, within PGA1_c08580at 886.553 kb on + strand, within PGA1_c08580at 886.559 kb on + strand, within PGA1_c08580at 886.689 kb on + strand, within PGA1_c08580at 886.697 kb on - strand, within PGA1_c08580at 886.741 kb on - strand, within PGA1_c08580at 886.748 kb on + strand, within PGA1_c08580at 886.756 kb on - strand, within PGA1_c08580at 886.756 kb on - strand, within PGA1_c08580at 886.758 kb on + strand, within PGA1_c08580at 886.758 kb on + strand, within PGA1_c08580at 886.758 kb on + strand, within PGA1_c08580at 886.775 kb on + strand, within PGA1_c08580at 886.785 kb on + strandat 886.785 kb on + strandat 886.793 kb on + strandat 886.793 kb on - strandat 886.793 kb on - strandat 886.801 kb on - strandat 886.801 kb on - strandat 886.811 kb on - strandat 886.819 kb on + strandat 886.827 kb on - strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.852 kb on + strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.860 kb on - strandat 886.887 kb on - strandat 886.897 kb on + strandat 886.917 kb on + strandat 886.932 kb on + strandat 886.932 kb on + strandat 886.932 kb on + strandat 886.932 kb on + strandat 886.940 kb on + strandat 886.940 kb on - strandat 886.940 kb on - strandat 886.945 kb on + strandat 886.947 kb on - strandat 886.950 kb on + strandat 886.951 kb on + strandat 886.953 kb on + strandat 886.953 kb on - strandat 886.959 kb on - strandat 886.966 kb on - strandat 887.010 kb on - strandat 887.010 kb on - strandat 887.025 kb on - strandat 887.032 kb on + strandat 887.049 kb on + strandat 887.052 kb on - strandat 887.057 kb on - strandat 887.063 kb on + strandat 887.076 kb on + strandat 887.131 kb on + strand, within PGA1_c08590at 887.171 kb on + strand, within PGA1_c08590at 887.179 kb on + strand, within PGA1_c08590at 887.184 kb on - strand, within PGA1_c08590at 887.217 kb on - strand, within PGA1_c08590at 887.219 kb on - strand, within PGA1_c08590at 887.219 kb on - strand, within PGA1_c08590at 887.219 kb on - strand, within PGA1_c08590at 887.293 kb on - strand, within PGA1_c08590at 887.376 kb on - strand, within PGA1_c08590at 887.388 kb on + strand, within PGA1_c08590at 887.388 kb on + strand, within PGA1_c08590at 887.396 kb on - strand, within PGA1_c08590at 887.396 kb on - strand, within PGA1_c08590at 887.396 kb on - strand, within PGA1_c08590at 887.396 kb on - strand, within PGA1_c08590at 887.466 kb on + strand, within PGA1_c08590at 887.466 kb on + strand, within PGA1_c08590at 887.489 kb on + strand, within PGA1_c08590at 887.513 kb on - strand, within PGA1_c08590at 887.552 kb on + strand, within PGA1_c08590at 887.552 kb on + strand, within PGA1_c08590at 887.555 kb on - strand, within PGA1_c08590at 887.555 kb on - strand, within PGA1_c08590at 887.557 kb on + strand, within PGA1_c08590at 887.557 kb on + strand, within PGA1_c08590at 887.557 kb on + strand, within PGA1_c08590at 887.557 kb on + strand, within PGA1_c08590at 887.557 kb on + strand, within PGA1_c08590at 887.557 kb on + strand, within PGA1_c08590at 887.560 kb on - strand, within PGA1_c08590at 887.564 kb on + strand, within PGA1_c08590at 887.565 kb on - strand, within PGA1_c08590at 887.565 kb on - strand, within PGA1_c08590at 887.565 kb on - strand, within PGA1_c08590at 887.572 kb on - strand, within PGA1_c08590at 887.578 kb on + strand, within PGA1_c08590at 887.619 kb on - strandat 887.634 kb on + strandat 887.646 kb on - strandat 887.810 kb on + strand, within PGA1_c08600at 887.814 kb on - strand, within PGA1_c08600at 887.818 kb on - strand, within PGA1_c08600at 887.836 kb on + strand, within PGA1_c08600at 887.836 kb on + strand, within PGA1_c08600at 887.836 kb on + strand, within PGA1_c08600at 887.836 kb on + strand, within PGA1_c08600at 887.844 kb on - strand, within PGA1_c08600at 887.844 kb on - strand, within PGA1_c08600at 887.844 kb on - strand, within PGA1_c08600at 887.858 kb on - strand, within PGA1_c08600at 887.923 kb on + strand, within PGA1_c08600at 887.923 kb on + strand, within PGA1_c08600at 887.931 kb on - strand, within PGA1_c08600at 887.965 kb on + strand, within PGA1_c08600at 887.973 kb on - strand, within PGA1_c08600at 887.975 kb on + strand, within PGA1_c08600at 887.990 kb on - strand, within PGA1_c08600at 888.017 kb on + strand, within PGA1_c08600at 888.017 kb on + strand, within PGA1_c08600at 888.017 kb on + strand, within PGA1_c08600at 888.017 kb on + strand, within PGA1_c08600at 888.025 kb on - strand, within PGA1_c08600at 888.080 kb on - strand, within PGA1_c08600at 888.081 kb on + strand, within PGA1_c08600at 888.081 kb on + strand, within PGA1_c08600at 888.089 kb on - strand, within PGA1_c08600at 888.127 kb on + strand, within PGA1_c08600at 888.149 kb on + strand, within PGA1_c08600at 888.149 kb on + strand, within PGA1_c08600at 888.149 kb on + strand, within PGA1_c08600at 888.149 kb on + strand, within PGA1_c08600at 888.149 kb on + strand, within PGA1_c08600at 888.157 kb on - strand, within PGA1_c08600at 888.258 kb on - strand, within PGA1_c08600at 888.288 kb on - strand, within PGA1_c08600at 888.288 kb on - strand, within PGA1_c08600at 888.306 kb on + strand, within PGA1_c08600at 888.368 kb on + strand, within PGA1_c08600at 888.521 kb on + strand, within PGA1_c08600at 888.522 kb on + strand, within PGA1_c08600at 888.536 kb on + strand, within PGA1_c08600at 888.537 kb on + strand, within PGA1_c08600at 888.592 kb on - strandat 888.635 kb on + strandat 888.636 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 100 mM
remove
886,061 + PGA1_c08580 0.50 -0.5
886,069 - PGA1_c08580 0.50 +0.6
886,097 + PGA1_c08580 0.52 -0.7
886,147 + PGA1_c08580 0.55 -1.2
886,243 + PGA1_c08580 0.60 +0.4
886,249 + PGA1_c08580 0.60 +1.2
886,355 + PGA1_c08580 0.66 +0.8
886,355 + PGA1_c08580 0.66 +0.8
886,377 + PGA1_c08580 0.68 -0.4
886,435 + PGA1_c08580 0.71 +0.3
886,443 - PGA1_c08580 0.71 -0.1
886,502 - PGA1_c08580 0.75 -0.7
886,502 - PGA1_c08580 0.75 +2.4
886,542 + PGA1_c08580 0.77 -0.9
886,553 + PGA1_c08580 0.77 -0.4
886,559 + PGA1_c08580 0.78 +0.4
886,689 + PGA1_c08580 0.85 +0.1
886,697 - PGA1_c08580 0.85 -3.3
886,741 - PGA1_c08580 0.88 +1.7
886,748 + PGA1_c08580 0.88 -0.1
886,756 - PGA1_c08580 0.89 -1.8
886,756 - PGA1_c08580 0.89 -1.5
886,758 + PGA1_c08580 0.89 +0.7
886,758 + PGA1_c08580 0.89 +1.0
886,758 + PGA1_c08580 0.89 -0.4
886,775 + PGA1_c08580 0.90 -0.3
886,785 + +0.5
886,785 + +0.8
886,793 + +0.3
886,793 - -0.0
886,793 - -0.2
886,801 - -0.3
886,801 - -0.8
886,811 - -2.6
886,819 + -1.3
886,827 - -1.0
886,852 + +0.1
886,852 + -0.3
886,852 + -0.4
886,852 + -0.7
886,852 + -0.3
886,852 + -0.8
886,852 + +1.6
886,852 + +0.6
886,852 + -2.4
886,852 + -0.0
886,852 + +0.2
886,860 - -0.1
886,860 - -2.1
886,860 - -2.3
886,860 - +0.1
886,860 - +1.6
886,860 - +0.5
886,860 - +1.3
886,860 - -1.0
886,860 - -0.5
886,887 - -1.8
886,897 + +0.2
886,917 + -0.3
886,932 + +0.2
886,932 + +0.1
886,932 + +0.0
886,932 + +1.3
886,940 + -2.8
886,940 - -1.3
886,940 - -0.7
886,945 + -0.2
886,947 - +0.4
886,950 + -1.8
886,951 + +0.9
886,953 + -1.3
886,953 - -1.6
886,959 - +0.6
886,966 - +1.5
887,010 - -0.8
887,010 - +0.7
887,025 - +0.7
887,032 + +0.1
887,049 + +1.0
887,052 - -0.0
887,057 - +0.0
887,063 + +0.1
887,076 + -0.1
887,131 + PGA1_c08590 0.13 +0.7
887,171 + PGA1_c08590 0.20 +0.4
887,179 + PGA1_c08590 0.22 +0.2
887,184 - PGA1_c08590 0.22 +0.8
887,217 - PGA1_c08590 0.28 +1.1
887,219 - PGA1_c08590 0.28 +1.3
887,219 - PGA1_c08590 0.28 +0.6
887,219 - PGA1_c08590 0.28 +1.4
887,293 - PGA1_c08590 0.41 +2.6
887,376 - PGA1_c08590 0.55 +1.1
887,388 + PGA1_c08590 0.57 +1.4
887,388 + PGA1_c08590 0.57 +1.0
887,396 - PGA1_c08590 0.59 +1.0
887,396 - PGA1_c08590 0.59 +1.6
887,396 - PGA1_c08590 0.59 +0.8
887,396 - PGA1_c08590 0.59 +0.1
887,466 + PGA1_c08590 0.70 +1.8
887,466 + PGA1_c08590 0.70 +0.6
887,489 + PGA1_c08590 0.74 +1.1
887,513 - PGA1_c08590 0.78 +1.3
887,552 + PGA1_c08590 0.85 +2.8
887,552 + PGA1_c08590 0.85 +2.4
887,555 - PGA1_c08590 0.86 +1.4
887,555 - PGA1_c08590 0.86 +1.2
887,557 + PGA1_c08590 0.86 +0.8
887,557 + PGA1_c08590 0.86 +0.2
887,557 + PGA1_c08590 0.86 -0.2
887,557 + PGA1_c08590 0.86 +1.0
887,557 + PGA1_c08590 0.86 +0.9
887,557 + PGA1_c08590 0.86 +0.8
887,560 - PGA1_c08590 0.86 +0.8
887,564 + PGA1_c08590 0.87 +1.1
887,565 - PGA1_c08590 0.87 +0.9
887,565 - PGA1_c08590 0.87 +0.8
887,565 - PGA1_c08590 0.87 +0.6
887,572 - PGA1_c08590 0.88 +0.3
887,578 + PGA1_c08590 0.89 -0.3
887,619 - +1.2
887,634 + +0.5
887,646 - -0.1
887,810 + PGA1_c08600 0.17 +1.6
887,814 - PGA1_c08600 0.17 +0.6
887,818 - PGA1_c08600 0.18 +0.6
887,836 + PGA1_c08600 0.20 -1.0
887,836 + PGA1_c08600 0.20 -0.3
887,836 + PGA1_c08600 0.20 +0.9
887,836 + PGA1_c08600 0.20 +0.6
887,844 - PGA1_c08600 0.20 +1.3
887,844 - PGA1_c08600 0.20 +1.7
887,844 - PGA1_c08600 0.20 +0.4
887,858 - PGA1_c08600 0.22 +0.4
887,923 + PGA1_c08600 0.28 -0.0
887,923 + PGA1_c08600 0.28 +0.8
887,931 - PGA1_c08600 0.29 +1.1
887,965 + PGA1_c08600 0.33 +1.2
887,973 - PGA1_c08600 0.33 +0.5
887,975 + PGA1_c08600 0.34 +0.9
887,990 - PGA1_c08600 0.35 -1.2
888,017 + PGA1_c08600 0.38 +0.8
888,017 + PGA1_c08600 0.38 +0.6
888,017 + PGA1_c08600 0.38 +0.3
888,017 + PGA1_c08600 0.38 -0.1
888,025 - PGA1_c08600 0.39 +0.7
888,080 - PGA1_c08600 0.44 +0.7
888,081 + PGA1_c08600 0.44 +0.6
888,081 + PGA1_c08600 0.44 +1.7
888,089 - PGA1_c08600 0.45 +1.4
888,127 + PGA1_c08600 0.49 +2.3
888,149 + PGA1_c08600 0.51 +1.2
888,149 + PGA1_c08600 0.51 +1.1
888,149 + PGA1_c08600 0.51 +0.8
888,149 + PGA1_c08600 0.51 -0.5
888,149 + PGA1_c08600 0.51 +0.8
888,157 - PGA1_c08600 0.52 +0.2
888,258 - PGA1_c08600 0.62 +1.8
888,288 - PGA1_c08600 0.65 +1.3
888,288 - PGA1_c08600 0.65 +0.8
888,306 + PGA1_c08600 0.67 +0.7
888,368 + PGA1_c08600 0.73 +0.2
888,521 + PGA1_c08600 0.88 +0.8
888,522 + PGA1_c08600 0.88 +1.1
888,536 + PGA1_c08600 0.90 +1.3
888,537 + PGA1_c08600 0.90 +0.4
888,592 - -0.5
888,635 + -0.0
888,636 - +1.4

Or see this region's nucleotide sequence