Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07030 and PGA1_c07040 are separated by 71 nucleotides PGA1_c07040 and PGA1_c07050 are separated by 87 nucleotides PGA1_c07050 and PGA1_c07060 are separated by 165 nucleotides
PGA1_c07030: PGA1_c07030 - phenylalanyl-tRNA synthetase beta chain, at 721,663 to 724,059
_c07030
PGA1_c07040: PGA1_c07040 - transcriptional regulator, lysR family, at 724,131 to 725,009
_c07040
PGA1_c07050: PGA1_c07050 - methyltransferase domain-containing protein, at 725,097 to 725,732
_c07050
PGA1_c07060: PGA1_c07060 - YtoQ family protein, at 725,898 to 726,347
_c07060
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 724.087 kb on - strand at 724.160 kb on + strand at 724.160 kb on + strand at 724.160 kb on + strand at 724.168 kb on - strand at 724.168 kb on - strand at 724.168 kb on - strand at 724.168 kb on - strand at 724.235 kb on + strand, within PGA1_c07040 at 724.243 kb on - strand, within PGA1_c07040 at 724.243 kb on - strand, within PGA1_c07040 at 724.244 kb on - strand, within PGA1_c07040 at 724.246 kb on + strand, within PGA1_c07040 at 724.254 kb on - strand, within PGA1_c07040 at 724.277 kb on - strand, within PGA1_c07040 at 724.333 kb on - strand, within PGA1_c07040 at 724.383 kb on - strand, within PGA1_c07040 at 724.416 kb on + strand, within PGA1_c07040 at 724.416 kb on + strand, within PGA1_c07040 at 724.416 kb on + strand, within PGA1_c07040 at 724.416 kb on + strand, within PGA1_c07040 at 724.424 kb on - strand, within PGA1_c07040 at 724.424 kb on - strand, within PGA1_c07040 at 724.424 kb on - strand, within PGA1_c07040 at 724.424 kb on - strand, within PGA1_c07040 at 724.455 kb on + strand, within PGA1_c07040 at 724.494 kb on + strand, within PGA1_c07040 at 724.494 kb on + strand, within PGA1_c07040 at 724.494 kb on + strand, within PGA1_c07040 at 724.494 kb on + strand, within PGA1_c07040 at 724.504 kb on + strand, within PGA1_c07040 at 724.530 kb on + strand, within PGA1_c07040 at 724.564 kb on - strand, within PGA1_c07040 at 724.594 kb on + strand, within PGA1_c07040 at 724.656 kb on + strand, within PGA1_c07040 at 724.675 kb on + strand, within PGA1_c07040 at 724.910 kb on - strand, within PGA1_c07040 at 724.912 kb on + strand, within PGA1_c07040 at 724.915 kb on - strand, within PGA1_c07040 at 724.918 kb on + strand, within PGA1_c07040 at 724.922 kb on + strand at 724.922 kb on + strand at 724.922 kb on + strand at 724.930 kb on - strand at 724.930 kb on - strand at 724.937 kb on + strand at 724.937 kb on + strand at 724.941 kb on + strand at 724.947 kb on + strand at 724.978 kb on + strand at 725.147 kb on + strand at 725.192 kb on + strand, within PGA1_c07050 at 725.197 kb on + strand, within PGA1_c07050 at 725.200 kb on - strand, within PGA1_c07050 at 725.200 kb on - strand, within PGA1_c07050 at 725.200 kb on - strand, within PGA1_c07050 at 725.205 kb on - strand, within PGA1_c07050 at 725.211 kb on - strand, within PGA1_c07050 at 725.219 kb on - strand, within PGA1_c07050 at 725.275 kb on - strand, within PGA1_c07050 at 725.325 kb on + strand, within PGA1_c07050 at 725.330 kb on + strand, within PGA1_c07050 at 725.338 kb on - strand, within PGA1_c07050 at 725.373 kb on - strand, within PGA1_c07050 at 725.390 kb on - strand, within PGA1_c07050 at 725.422 kb on + strand, within PGA1_c07050 at 725.430 kb on - strand, within PGA1_c07050 at 725.489 kb on - strand, within PGA1_c07050 at 725.532 kb on + strand, within PGA1_c07050 at 725.597 kb on + strand, within PGA1_c07050 at 725.751 kb on + strand at 725.769 kb on - strand at 725.769 kb on - strand at 725.793 kb on - strand at 725.802 kb on + strand at 725.836 kb on + strand at 725.867 kb on + strand at 725.954 kb on - strand, within PGA1_c07060 at 725.984 kb on + strand, within PGA1_c07060 at 725.992 kb on - strand, within PGA1_c07060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 724,087 - -0.9 724,160 + +0.3 724,160 + -0.4 724,160 + +0.1 724,168 - +1.0 724,168 - -1.7 724,168 - -0.5 724,168 - +0.7 724,235 + PGA1_c07040 0.12 -0.4 724,243 - PGA1_c07040 0.13 -2.1 724,243 - PGA1_c07040 0.13 -1.4 724,244 - PGA1_c07040 0.13 +1.1 724,246 + PGA1_c07040 0.13 +0.3 724,254 - PGA1_c07040 0.14 +0.9 724,277 - PGA1_c07040 0.17 -0.1 724,333 - PGA1_c07040 0.23 +0.6 724,383 - PGA1_c07040 0.29 +0.6 724,416 + PGA1_c07040 0.32 -1.4 724,416 + PGA1_c07040 0.32 -0.6 724,416 + PGA1_c07040 0.32 +1.6 724,416 + PGA1_c07040 0.32 -2.3 724,424 - PGA1_c07040 0.33 -1.4 724,424 - PGA1_c07040 0.33 +0.4 724,424 - PGA1_c07040 0.33 +0.9 724,424 - PGA1_c07040 0.33 -0.9 724,455 + PGA1_c07040 0.37 +1.6 724,494 + PGA1_c07040 0.41 -0.8 724,494 + PGA1_c07040 0.41 +0.6 724,494 + PGA1_c07040 0.41 -0.1 724,494 + PGA1_c07040 0.41 -0.3 724,504 + PGA1_c07040 0.42 -1.3 724,530 + PGA1_c07040 0.45 -0.3 724,564 - PGA1_c07040 0.49 -0.6 724,594 + PGA1_c07040 0.53 -1.1 724,656 + PGA1_c07040 0.60 -0.6 724,675 + PGA1_c07040 0.62 -0.4 724,910 - PGA1_c07040 0.89 -0.3 724,912 + PGA1_c07040 0.89 -0.0 724,915 - PGA1_c07040 0.89 -2.0 724,918 + PGA1_c07040 0.90 -0.8 724,922 + -0.1 724,922 + +1.0 724,922 + -0.0 724,930 - +0.3 724,930 - +0.6 724,937 + +1.1 724,937 + -0.5 724,941 + -0.4 724,947 + +1.0 724,978 + -1.3 725,147 + -0.9 725,192 + PGA1_c07050 0.15 -0.3 725,197 + PGA1_c07050 0.16 +0.2 725,200 - PGA1_c07050 0.16 -0.3 725,200 - PGA1_c07050 0.16 +1.5 725,200 - PGA1_c07050 0.16 +0.4 725,205 - PGA1_c07050 0.17 -1.2 725,211 - PGA1_c07050 0.18 -0.6 725,219 - PGA1_c07050 0.19 +0.3 725,275 - PGA1_c07050 0.28 +0.8 725,325 + PGA1_c07050 0.36 +0.5 725,330 + PGA1_c07050 0.37 +1.0 725,338 - PGA1_c07050 0.38 +0.2 725,373 - PGA1_c07050 0.43 +0.5 725,390 - PGA1_c07050 0.46 -0.4 725,422 + PGA1_c07050 0.51 -0.6 725,430 - PGA1_c07050 0.52 -1.1 725,489 - PGA1_c07050 0.62 -0.7 725,532 + PGA1_c07050 0.68 -0.3 725,597 + PGA1_c07050 0.79 +0.4 725,751 + +0.3 725,769 - +2.2 725,769 - -0.7 725,793 - -0.5 725,802 + +0.9 725,836 + -0.1 725,867 + -1.0 725,954 - PGA1_c07060 0.12 -0.5 725,984 + PGA1_c07060 0.19 -1.1 725,992 - PGA1_c07060 0.21 -1.5
Or see this region's nucleotide sequence