Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02160 and PGA1_262p02170 are separated by 24 nucleotides PGA1_262p02170 and PGA1_262p02180 are separated by 187 nucleotides
PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914
_262p02160
PGA1_262p02170: PGA1_262p02170 - putative chemoreceptor glutamine deamidase CheD, at 234,939 to 235,493
_262p02170
PGA1_262p02180: PGA1_262p02180 - molybdate-binding periplasmic protein ModA, at 235,681 to 236,496
_262p02180
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 233.967 kb on - strand at 234.061 kb on - strand, within PGA1_262p02160 at 234.065 kb on - strand, within PGA1_262p02160 at 234.072 kb on + strand, within PGA1_262p02160 at 234.126 kb on + strand, within PGA1_262p02160 at 234.151 kb on - strand, within PGA1_262p02160 at 234.339 kb on + strand, within PGA1_262p02160 at 234.401 kb on - strand, within PGA1_262p02160 at 234.418 kb on - strand, within PGA1_262p02160 at 234.428 kb on - strand, within PGA1_262p02160 at 234.515 kb on + strand, within PGA1_262p02160 at 234.523 kb on - strand, within PGA1_262p02160 at 234.590 kb on + strand, within PGA1_262p02160 at 234.590 kb on + strand, within PGA1_262p02160 at 234.599 kb on - strand, within PGA1_262p02160 at 234.609 kb on - strand, within PGA1_262p02160 at 234.623 kb on + strand, within PGA1_262p02160 at 234.623 kb on + strand, within PGA1_262p02160 at 234.631 kb on - strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.732 kb on + strand, within PGA1_262p02160 at 234.735 kb on - strand, within PGA1_262p02160 at 234.740 kb on - strand, within PGA1_262p02160 at 234.752 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.980 kb on - strand at 235.060 kb on - strand, within PGA1_262p02170 at 235.095 kb on + strand, within PGA1_262p02170 at 235.133 kb on + strand, within PGA1_262p02170 at 235.278 kb on + strand, within PGA1_262p02170 at 235.560 kb on + strand at 235.641 kb on + strand at 235.644 kb on - strand at 235.696 kb on - strand at 235.715 kb on + strand at 235.723 kb on - strand at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.843 kb on - strand, within PGA1_262p02180 at 235.854 kb on + strand, within PGA1_262p02180 at 235.862 kb on - strand, within PGA1_262p02180 at 235.977 kb on - strand, within PGA1_262p02180 at 236.060 kb on + strand, within PGA1_262p02180 at 236.151 kb on + strand, within PGA1_262p02180 at 236.151 kb on + strand, within PGA1_262p02180 at 236.159 kb on - strand, within PGA1_262p02180 at 236.306 kb on + strand, within PGA1_262p02180 at 236.314 kb on - strand, within PGA1_262p02180 at 236.324 kb on + strand, within PGA1_262p02180 at 236.465 kb on - strand at 236.481 kb on - strand at 236.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 233,967 - +1.0 234,061 - PGA1_262p02160 0.15 +0.7 234,065 - PGA1_262p02160 0.15 +1.3 234,072 + PGA1_262p02160 0.16 +0.1 234,126 + PGA1_262p02160 0.21 -0.4 234,151 - PGA1_262p02160 0.24 +0.8 234,339 + PGA1_262p02160 0.43 +1.5 234,401 - PGA1_262p02160 0.49 +1.7 234,418 - PGA1_262p02160 0.51 +0.4 234,428 - PGA1_262p02160 0.52 -1.0 234,515 + PGA1_262p02160 0.60 -0.6 234,523 - PGA1_262p02160 0.61 -0.4 234,590 + PGA1_262p02160 0.68 +0.8 234,590 + PGA1_262p02160 0.68 +1.0 234,599 - PGA1_262p02160 0.69 -0.9 234,609 - PGA1_262p02160 0.70 -1.4 234,623 + PGA1_262p02160 0.71 -0.2 234,623 + PGA1_262p02160 0.71 +0.3 234,631 - PGA1_262p02160 0.72 +0.5 234,684 + PGA1_262p02160 0.77 +0.2 234,684 + PGA1_262p02160 0.77 -0.2 234,692 - PGA1_262p02160 0.78 -0.5 234,692 - PGA1_262p02160 0.78 +0.8 234,732 + PGA1_262p02160 0.82 -0.9 234,735 - PGA1_262p02160 0.82 +0.0 234,740 - PGA1_262p02160 0.83 -1.0 234,752 - PGA1_262p02160 0.84 +0.0 234,785 - PGA1_262p02160 0.87 -0.4 234,785 - PGA1_262p02160 0.87 +0.4 234,980 - -0.9 235,060 - PGA1_262p02170 0.22 +0.6 235,095 + PGA1_262p02170 0.28 +0.3 235,133 + PGA1_262p02170 0.35 +0.8 235,278 + PGA1_262p02170 0.61 +0.3 235,560 + +0.2 235,641 + -0.6 235,644 - +0.7 235,696 - -0.7 235,715 + -0.4 235,723 - +0.3 235,832 - PGA1_262p02180 0.19 -1.7 235,832 - PGA1_262p02180 0.19 -0.6 235,832 - PGA1_262p02180 0.19 -0.5 235,843 - PGA1_262p02180 0.20 +0.2 235,854 + PGA1_262p02180 0.21 -1.0 235,862 - PGA1_262p02180 0.22 -0.4 235,977 - PGA1_262p02180 0.36 +1.4 236,060 + PGA1_262p02180 0.46 -1.1 236,151 + PGA1_262p02180 0.58 -0.2 236,151 + PGA1_262p02180 0.58 -0.3 236,159 - PGA1_262p02180 0.59 -0.1 236,306 + PGA1_262p02180 0.77 +0.3 236,314 - PGA1_262p02180 0.78 -0.3 236,324 + PGA1_262p02180 0.79 -0.2 236,465 - -2.5 236,481 - -1.0 236,487 + +0.3
Or see this region's nucleotide sequence