Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01960 and PGA1_262p01970 are separated by 168 nucleotides PGA1_262p01970 and PGA1_262p01980 are separated by 43 nucleotides PGA1_262p01980 and PGA1_262p01990 are separated by 97 nucleotides
PGA1_262p01960: PGA1_262p01960 - hypothetical protein, at 215,123 to 215,875
_262p01960
PGA1_262p01970: PGA1_262p01970 - putative transcriptional regulator, TetR family, at 216,044 to 216,652
_262p01970
PGA1_262p01980: PGA1_262p01980 - putative enoyl-CoA hydratase, at 216,696 to 217,487
_262p01980
PGA1_262p01990: PGA1_262p01990 - Predicted permeases, at 217,585 to 218,607
_262p01990
Position (kb) 216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.080 kb on + strand at 215.083 kb on + strand at 215.095 kb on + strand at 215.096 kb on - strand at 215.098 kb on - strand at 215.103 kb on - strand at 215.105 kb on + strand at 215.105 kb on + strand at 215.105 kb on + strand at 215.105 kb on + strand at 215.105 kb on + strand at 215.105 kb on + strand at 215.105 kb on + strand at 215.106 kb on + strand at 215.113 kb on - strand at 215.113 kb on - strand at 215.113 kb on - strand at 215.123 kb on - strand at 215.124 kb on + strand at 215.142 kb on - strand at 215.142 kb on - strand at 215.179 kb on - strand at 215.189 kb on - strand at 215.190 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.195 kb on + strand at 215.202 kb on + strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.203 kb on - strand, within PGA1_262p01960 at 215.207 kb on + strand, within PGA1_262p01960 at 215.207 kb on + strand, within PGA1_262p01960 at 215.207 kb on + strand, within PGA1_262p01960 at 215.207 kb on + strand, within PGA1_262p01960 at 215.215 kb on - strand, within PGA1_262p01960 at 215.215 kb on - strand, within PGA1_262p01960 at 215.229 kb on + strand, within PGA1_262p01960 at 215.236 kb on + strand, within PGA1_262p01960 at 215.236 kb on + strand, within PGA1_262p01960 at 215.244 kb on - strand, within PGA1_262p01960 at 215.244 kb on - strand, within PGA1_262p01960 at 215.244 kb on - strand, within PGA1_262p01960 at 215.260 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.265 kb on + strand, within PGA1_262p01960 at 215.268 kb on - strand, within PGA1_262p01960 at 215.268 kb on - strand, within PGA1_262p01960 at 215.271 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.273 kb on - strand, within PGA1_262p01960 at 215.278 kb on - strand, within PGA1_262p01960 at 215.308 kb on + strand, within PGA1_262p01960 at 215.315 kb on + strand, within PGA1_262p01960 at 215.316 kb on - strand, within PGA1_262p01960 at 215.319 kb on + strand, within PGA1_262p01960 at 215.319 kb on + strand, within PGA1_262p01960 at 215.323 kb on - strand, within PGA1_262p01960 at 215.327 kb on - strand, within PGA1_262p01960 at 215.327 kb on - strand, within PGA1_262p01960 at 215.352 kb on + strand, within PGA1_262p01960 at 215.352 kb on + strand, within PGA1_262p01960 at 215.354 kb on + strand, within PGA1_262p01960 at 215.360 kb on - strand, within PGA1_262p01960 at 215.361 kb on - strand, within PGA1_262p01960 at 215.363 kb on + strand, within PGA1_262p01960 at 215.373 kb on - strand, within PGA1_262p01960 at 215.404 kb on + strand, within PGA1_262p01960 at 215.404 kb on + strand, within PGA1_262p01960 at 215.409 kb on + strand, within PGA1_262p01960 at 215.412 kb on - strand, within PGA1_262p01960 at 215.412 kb on - strand, within PGA1_262p01960 at 215.412 kb on - strand, within PGA1_262p01960 at 215.412 kb on - strand, within PGA1_262p01960 at 215.414 kb on + strand, within PGA1_262p01960 at 215.414 kb on + strand, within PGA1_262p01960 at 215.422 kb on - strand, within PGA1_262p01960 at 215.422 kb on - strand, within PGA1_262p01960 at 215.422 kb on - strand, within PGA1_262p01960 at 215.422 kb on - strand, within PGA1_262p01960 at 215.449 kb on + strand, within PGA1_262p01960 at 215.449 kb on + strand, within PGA1_262p01960 at 215.457 kb on - strand, within PGA1_262p01960 at 215.461 kb on - strand, within PGA1_262p01960 at 215.473 kb on + strand, within PGA1_262p01960 at 215.476 kb on - strand, within PGA1_262p01960 at 215.481 kb on - strand, within PGA1_262p01960 at 215.483 kb on + strand, within PGA1_262p01960 at 215.491 kb on - strand, within PGA1_262p01960 at 215.493 kb on + strand, within PGA1_262p01960 at 215.501 kb on - strand, within PGA1_262p01960 at 215.508 kb on + strand, within PGA1_262p01960 at 215.515 kb on + strand, within PGA1_262p01960 at 215.518 kb on - strand, within PGA1_262p01960 at 215.523 kb on + strand, within PGA1_262p01960 at 215.530 kb on + strand, within PGA1_262p01960 at 215.530 kb on + strand, within PGA1_262p01960 at 215.531 kb on - strand, within PGA1_262p01960 at 215.578 kb on + strand, within PGA1_262p01960 at 215.596 kb on + strand, within PGA1_262p01960 at 215.602 kb on - strand, within PGA1_262p01960 at 215.660 kb on + strand, within PGA1_262p01960 at 215.693 kb on + strand, within PGA1_262p01960 at 215.698 kb on - strand, within PGA1_262p01960 at 215.701 kb on - strand, within PGA1_262p01960 at 215.707 kb on - strand, within PGA1_262p01960 at 215.799 kb on + strand, within PGA1_262p01960 at 215.799 kb on + strand, within PGA1_262p01960 at 215.799 kb on + strand, within PGA1_262p01960 at 215.907 kb on + strand at 215.907 kb on + strand at 215.907 kb on + strand at 215.915 kb on - strand at 215.915 kb on - strand at 215.915 kb on - strand at 215.917 kb on + strand at 215.937 kb on + strand at 215.942 kb on + strand at 215.947 kb on - strand at 215.950 kb on - strand at 215.950 kb on - strand at 215.955 kb on + strand at 215.968 kb on - strand at 215.977 kb on + strand at 216.001 kb on + strand at 216.207 kb on + strand, within PGA1_262p01970 at 216.251 kb on - strand, within PGA1_262p01970 at 216.251 kb on - strand, within PGA1_262p01970 at 216.292 kb on - strand, within PGA1_262p01970 at 216.397 kb on - strand, within PGA1_262p01970 at 216.430 kb on + strand, within PGA1_262p01970 at 216.438 kb on - strand, within PGA1_262p01970 at 216.438 kb on - strand, within PGA1_262p01970 at 216.488 kb on - strand, within PGA1_262p01970 at 216.526 kb on + strand, within PGA1_262p01970 at 216.532 kb on - strand, within PGA1_262p01970 at 216.534 kb on - strand, within PGA1_262p01970 at 216.534 kb on - strand, within PGA1_262p01970 at 216.534 kb on - strand, within PGA1_262p01970 at 216.534 kb on - strand, within PGA1_262p01970 at 216.534 kb on - strand, within PGA1_262p01970 at 216.616 kb on + strand at 216.636 kb on - strand at 216.660 kb on + strand at 216.739 kb on + strand at 216.739 kb on + strand at 216.744 kb on + strand at 216.744 kb on + strand at 216.744 kb on + strand at 216.747 kb on - strand at 216.752 kb on - strand at 216.752 kb on - strand at 216.764 kb on + strand at 216.772 kb on + strand at 216.784 kb on - strand, within PGA1_262p01980 at 216.784 kb on - strand, within PGA1_262p01980 at 216.784 kb on - strand, within PGA1_262p01980 at 216.862 kb on - strand, within PGA1_262p01980 at 216.864 kb on + strand, within PGA1_262p01980 at 216.875 kb on + strand, within PGA1_262p01980 at 216.922 kb on - strand, within PGA1_262p01980 at 216.922 kb on - strand, within PGA1_262p01980 at 216.965 kb on + strand, within PGA1_262p01980 at 216.973 kb on - strand, within PGA1_262p01980 at 216.973 kb on - strand, within PGA1_262p01980 at 217.011 kb on + strand, within PGA1_262p01980 at 217.049 kb on + strand, within PGA1_262p01980 at 217.114 kb on - strand, within PGA1_262p01980 at 217.268 kb on + strand, within PGA1_262p01980 at 217.273 kb on - strand, within PGA1_262p01980 at 217.279 kb on + strand, within PGA1_262p01980 at 217.346 kb on + strand, within PGA1_262p01980 at 217.353 kb on + strand, within PGA1_262p01980 at 217.355 kb on + strand, within PGA1_262p01980 at 217.363 kb on - strand, within PGA1_262p01980 at 217.400 kb on - strand, within PGA1_262p01980 at 217.409 kb on + strand at 217.445 kb on - strand at 217.446 kb on - strand at 217.582 kb on + strand at 217.582 kb on + strand at 217.624 kb on + strand at 217.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 215,080 + +0.8 215,083 + -2.4 215,095 + -0.1 215,096 - -0.3 215,098 - -0.7 215,103 - +0.3 215,105 + +0.6 215,105 + -0.2 215,105 + +2.0 215,105 + -0.7 215,105 + -0.7 215,105 + +0.9 215,105 + -0.1 215,106 + +0.8 215,113 - +0.2 215,113 - +0.7 215,113 - -0.2 215,123 - +0.5 215,124 + -1.3 215,142 - +0.5 215,142 - +1.8 215,179 - -0.1 215,189 - -1.0 215,190 + -0.3 215,195 + +0.1 215,195 + -0.0 215,195 + +0.6 215,195 + -0.4 215,195 + -0.6 215,195 + -0.7 215,195 + -0.3 215,195 + +0.3 215,195 + +1.1 215,202 + PGA1_262p01960 0.10 +0.7 215,203 - PGA1_262p01960 0.11 +0.4 215,203 - PGA1_262p01960 0.11 +0.3 215,203 - PGA1_262p01960 0.11 +0.2 215,203 - PGA1_262p01960 0.11 +0.3 215,203 - PGA1_262p01960 0.11 -0.3 215,203 - PGA1_262p01960 0.11 +1.0 215,203 - PGA1_262p01960 0.11 -0.8 215,203 - PGA1_262p01960 0.11 +0.3 215,203 - PGA1_262p01960 0.11 -0.6 215,203 - PGA1_262p01960 0.11 -0.0 215,203 - PGA1_262p01960 0.11 -1.1 215,203 - PGA1_262p01960 0.11 -1.2 215,203 - PGA1_262p01960 0.11 +2.0 215,203 - PGA1_262p01960 0.11 -1.2 215,203 - PGA1_262p01960 0.11 -0.1 215,203 - PGA1_262p01960 0.11 -2.0 215,203 - PGA1_262p01960 0.11 -0.1 215,203 - PGA1_262p01960 0.11 -1.0 215,207 + PGA1_262p01960 0.11 +0.6 215,207 + PGA1_262p01960 0.11 +0.3 215,207 + PGA1_262p01960 0.11 +1.1 215,207 + PGA1_262p01960 0.11 +0.2 215,215 - PGA1_262p01960 0.12 +0.1 215,215 - PGA1_262p01960 0.12 -0.5 215,229 + PGA1_262p01960 0.14 +0.7 215,236 + PGA1_262p01960 0.15 -1.0 215,236 + PGA1_262p01960 0.15 +0.3 215,244 - PGA1_262p01960 0.16 -0.5 215,244 - PGA1_262p01960 0.16 -1.0 215,244 - PGA1_262p01960 0.16 +0.8 215,260 + PGA1_262p01960 0.18 +0.6 215,265 + PGA1_262p01960 0.19 -1.7 215,265 + PGA1_262p01960 0.19 +1.0 215,265 + PGA1_262p01960 0.19 +0.3 215,265 + PGA1_262p01960 0.19 -1.1 215,265 + PGA1_262p01960 0.19 -1.2 215,265 + PGA1_262p01960 0.19 +0.5 215,265 + PGA1_262p01960 0.19 +0.1 215,265 + PGA1_262p01960 0.19 +0.5 215,268 - PGA1_262p01960 0.19 +0.8 215,268 - PGA1_262p01960 0.19 -0.9 215,271 - PGA1_262p01960 0.20 +1.3 215,273 - PGA1_262p01960 0.20 -0.4 215,273 - PGA1_262p01960 0.20 -0.3 215,273 - PGA1_262p01960 0.20 +1.0 215,273 - PGA1_262p01960 0.20 -0.5 215,273 - PGA1_262p01960 0.20 -0.4 215,273 - PGA1_262p01960 0.20 +1.0 215,273 - PGA1_262p01960 0.20 +0.0 215,273 - PGA1_262p01960 0.20 +0.8 215,273 - PGA1_262p01960 0.20 +0.2 215,273 - PGA1_262p01960 0.20 +0.7 215,273 - PGA1_262p01960 0.20 -0.2 215,273 - PGA1_262p01960 0.20 -1.0 215,273 - PGA1_262p01960 0.20 +0.3 215,273 - PGA1_262p01960 0.20 +0.4 215,273 - PGA1_262p01960 0.20 +1.7 215,273 - PGA1_262p01960 0.20 +0.1 215,273 - PGA1_262p01960 0.20 -0.7 215,273 - PGA1_262p01960 0.20 -0.1 215,273 - PGA1_262p01960 0.20 -1.2 215,273 - PGA1_262p01960 0.20 +0.2 215,273 - PGA1_262p01960 0.20 +1.1 215,273 - PGA1_262p01960 0.20 +0.2 215,273 - PGA1_262p01960 0.20 +0.7 215,273 - PGA1_262p01960 0.20 -0.3 215,273 - PGA1_262p01960 0.20 +0.3 215,273 - PGA1_262p01960 0.20 +0.1 215,278 - PGA1_262p01960 0.21 -0.2 215,308 + PGA1_262p01960 0.25 -0.8 215,315 + PGA1_262p01960 0.25 -0.7 215,316 - PGA1_262p01960 0.26 +0.7 215,319 + PGA1_262p01960 0.26 +0.7 215,319 + PGA1_262p01960 0.26 -0.6 215,323 - PGA1_262p01960 0.27 -2.4 215,327 - PGA1_262p01960 0.27 -0.7 215,327 - PGA1_262p01960 0.27 +0.5 215,352 + PGA1_262p01960 0.30 -0.5 215,352 + PGA1_262p01960 0.30 -0.0 215,354 + PGA1_262p01960 0.31 +0.0 215,360 - PGA1_262p01960 0.31 +0.5 215,361 - PGA1_262p01960 0.32 +0.6 215,363 + PGA1_262p01960 0.32 +0.0 215,373 - PGA1_262p01960 0.33 +0.8 215,404 + PGA1_262p01960 0.37 -0.4 215,404 + PGA1_262p01960 0.37 +0.2 215,409 + PGA1_262p01960 0.38 +0.6 215,412 - PGA1_262p01960 0.38 +0.5 215,412 - PGA1_262p01960 0.38 +0.2 215,412 - PGA1_262p01960 0.38 +0.4 215,412 - PGA1_262p01960 0.38 -0.2 215,414 + PGA1_262p01960 0.39 +0.6 215,414 + PGA1_262p01960 0.39 -0.3 215,422 - PGA1_262p01960 0.40 -0.3 215,422 - PGA1_262p01960 0.40 +0.6 215,422 - PGA1_262p01960 0.40 -0.7 215,422 - PGA1_262p01960 0.40 -0.4 215,449 + PGA1_262p01960 0.43 -0.3 215,449 + PGA1_262p01960 0.43 +0.4 215,457 - PGA1_262p01960 0.44 -1.5 215,461 - PGA1_262p01960 0.45 -1.7 215,473 + PGA1_262p01960 0.46 +0.9 215,476 - PGA1_262p01960 0.47 +0.3 215,481 - PGA1_262p01960 0.48 -0.6 215,483 + PGA1_262p01960 0.48 +0.1 215,491 - PGA1_262p01960 0.49 +1.2 215,493 + PGA1_262p01960 0.49 +1.5 215,501 - PGA1_262p01960 0.50 -0.7 215,508 + PGA1_262p01960 0.51 -1.4 215,515 + PGA1_262p01960 0.52 -0.2 215,518 - PGA1_262p01960 0.52 +1.3 215,523 + PGA1_262p01960 0.53 -0.3 215,530 + PGA1_262p01960 0.54 +0.8 215,530 + PGA1_262p01960 0.54 +0.7 215,531 - PGA1_262p01960 0.54 -1.3 215,578 + PGA1_262p01960 0.60 -1.5 215,596 + PGA1_262p01960 0.63 -0.7 215,602 - PGA1_262p01960 0.64 -0.1 215,660 + PGA1_262p01960 0.71 +0.2 215,693 + PGA1_262p01960 0.76 +0.6 215,698 - PGA1_262p01960 0.76 -0.4 215,701 - PGA1_262p01960 0.77 +1.1 215,707 - PGA1_262p01960 0.78 -1.0 215,799 + PGA1_262p01960 0.90 -1.6 215,799 + PGA1_262p01960 0.90 +0.5 215,799 + PGA1_262p01960 0.90 +0.2 215,907 + -0.0 215,907 + -0.2 215,907 + -1.4 215,915 - -1.2 215,915 - +0.0 215,915 - +0.0 215,917 + -0.2 215,937 + -0.8 215,942 + -0.2 215,947 - +1.5 215,950 - +0.4 215,950 - +0.5 215,955 + -0.9 215,968 - +0.4 215,977 + +0.6 216,001 + -0.3 216,207 + PGA1_262p01970 0.27 +0.2 216,251 - PGA1_262p01970 0.34 -0.2 216,251 - PGA1_262p01970 0.34 -1.2 216,292 - PGA1_262p01970 0.41 +1.6 216,397 - PGA1_262p01970 0.58 -0.3 216,430 + PGA1_262p01970 0.63 +1.5 216,438 - PGA1_262p01970 0.65 +1.4 216,438 - PGA1_262p01970 0.65 -0.3 216,488 - PGA1_262p01970 0.73 -0.5 216,526 + PGA1_262p01970 0.79 +0.8 216,532 - PGA1_262p01970 0.80 -0.4 216,534 - PGA1_262p01970 0.80 +1.2 216,534 - PGA1_262p01970 0.80 -1.2 216,534 - PGA1_262p01970 0.80 +0.3 216,534 - PGA1_262p01970 0.80 +0.7 216,534 - PGA1_262p01970 0.80 +0.7 216,616 + -0.8 216,636 - +1.3 216,660 + -2.2 216,739 + -2.0 216,739 + -0.5 216,744 + -1.2 216,744 + -2.2 216,744 + +0.8 216,747 - -0.7 216,752 - -0.3 216,752 - +1.7 216,764 + -3.3 216,772 + -1.4 216,784 - PGA1_262p01980 0.11 +1.0 216,784 - PGA1_262p01980 0.11 +0.1 216,784 - PGA1_262p01980 0.11 +1.2 216,862 - PGA1_262p01980 0.21 +0.1 216,864 + PGA1_262p01980 0.21 +0.3 216,875 + PGA1_262p01980 0.23 +0.5 216,922 - PGA1_262p01980 0.29 -1.3 216,922 - PGA1_262p01980 0.29 -0.6 216,965 + PGA1_262p01980 0.34 +0.2 216,973 - PGA1_262p01980 0.35 -0.1 216,973 - PGA1_262p01980 0.35 +0.5 217,011 + PGA1_262p01980 0.40 -1.5 217,049 + PGA1_262p01980 0.45 +0.9 217,114 - PGA1_262p01980 0.53 +0.8 217,268 + PGA1_262p01980 0.72 -0.9 217,273 - PGA1_262p01980 0.73 -0.2 217,279 + PGA1_262p01980 0.74 +0.8 217,346 + PGA1_262p01980 0.82 +1.0 217,353 + PGA1_262p01980 0.83 -0.3 217,355 + PGA1_262p01980 0.83 +0.1 217,363 - PGA1_262p01980 0.84 -0.3 217,400 - PGA1_262p01980 0.89 -0.3 217,409 + -0.3 217,445 - +1.2 217,446 - -0.3 217,582 + +0.6 217,582 + +0.5 217,624 + -0.0 217,632 - -0.9
Or see this region's nucleotide sequence