Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00810 and PGA1_262p00820 are separated by 79 nucleotides PGA1_262p00820 and PGA1_262p00830 are separated by 4 nucleotides PGA1_262p00830 and PGA1_262p00840 are separated by 91 nucleotides
PGA1_262p00810: PGA1_262p00810 - putative flavoprotein, HFCD family, at 90,939 to 91,508
_262p00810
PGA1_262p00820: PGA1_262p00820 - hypothetical protein, at 91,588 to 92,028
_262p00820
PGA1_262p00830: PGA1_262p00830 - hypothetical protein, at 92,033 to 93,094
_262p00830
PGA1_262p00840: PGA1_262p00840 - hypothetical protein, at 93,186 to 94,511
_262p00840
Position (kb)
92
93
94 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 91.042 kb on + strand, within PGA1_262p00810 at 91.042 kb on + strand, within PGA1_262p00810 at 91.050 kb on - strand, within PGA1_262p00810 at 91.061 kb on + strand, within PGA1_262p00810 at 91.069 kb on - strand, within PGA1_262p00810 at 91.069 kb on - strand, within PGA1_262p00810 at 91.147 kb on - strand, within PGA1_262p00810 at 91.265 kb on - strand, within PGA1_262p00810 at 91.293 kb on + strand, within PGA1_262p00810 at 91.375 kb on + strand, within PGA1_262p00810 at 91.569 kb on - strand at 91.585 kb on + strand at 91.791 kb on - strand, within PGA1_262p00820 at 91.871 kb on + strand, within PGA1_262p00820 at 92.236 kb on - strand, within PGA1_262p00830 at 92.374 kb on + strand, within PGA1_262p00830 at 92.616 kb on - strand, within PGA1_262p00830 at 92.667 kb on - strand, within PGA1_262p00830 at 92.680 kb on + strand, within PGA1_262p00830 at 92.689 kb on - strand, within PGA1_262p00830 at 92.713 kb on + strand, within PGA1_262p00830 at 92.796 kb on - strand, within PGA1_262p00830 at 92.935 kb on + strand, within PGA1_262p00830 at 92.943 kb on - strand, within PGA1_262p00830 at 93.240 kb on + strand at 93.411 kb on + strand, within PGA1_262p00840 at 93.513 kb on + strand, within PGA1_262p00840 at 93.582 kb on + strand, within PGA1_262p00840 at 93.588 kb on + strand, within PGA1_262p00840 at 93.646 kb on + strand, within PGA1_262p00840 at 93.654 kb on - strand, within PGA1_262p00840 at 93.662 kb on - strand, within PGA1_262p00840 at 93.680 kb on - strand, within PGA1_262p00840 at 93.709 kb on + strand, within PGA1_262p00840 at 93.922 kb on - strand, within PGA1_262p00840 at 93.924 kb on + strand, within PGA1_262p00840 at 93.929 kb on + strand, within PGA1_262p00840 at 93.982 kb on - strand, within PGA1_262p00840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 91,042 + PGA1_262p00810 0.18 +0.5 91,042 + PGA1_262p00810 0.18 -1.2 91,050 - PGA1_262p00810 0.19 -0.4 91,061 + PGA1_262p00810 0.21 -2.0 91,069 - PGA1_262p00810 0.23 -0.2 91,069 - PGA1_262p00810 0.23 +0.8 91,147 - PGA1_262p00810 0.36 +0.5 91,265 - PGA1_262p00810 0.57 -0.8 91,293 + PGA1_262p00810 0.62 +0.8 91,375 + PGA1_262p00810 0.76 +0.1 91,569 - +1.1 91,585 + +1.5 91,791 - PGA1_262p00820 0.46 +1.3 91,871 + PGA1_262p00820 0.64 -0.3 92,236 - PGA1_262p00830 0.19 -0.3 92,374 + PGA1_262p00830 0.32 +0.5 92,616 - PGA1_262p00830 0.55 +0.3 92,667 - PGA1_262p00830 0.60 +0.7 92,680 + PGA1_262p00830 0.61 -0.2 92,689 - PGA1_262p00830 0.62 +0.4 92,713 + PGA1_262p00830 0.64 +0.5 92,796 - PGA1_262p00830 0.72 +0.6 92,935 + PGA1_262p00830 0.85 +1.8 92,943 - PGA1_262p00830 0.86 +0.4 93,240 + -0.7 93,411 + PGA1_262p00840 0.17 -0.3 93,513 + PGA1_262p00840 0.25 +1.1 93,582 + PGA1_262p00840 0.30 -1.3 93,588 + PGA1_262p00840 0.30 -0.2 93,646 + PGA1_262p00840 0.35 -1.6 93,654 - PGA1_262p00840 0.35 -0.3 93,662 - PGA1_262p00840 0.36 -0.1 93,680 - PGA1_262p00840 0.37 +0.4 93,709 + PGA1_262p00840 0.39 -0.0 93,922 - PGA1_262p00840 0.56 -0.6 93,924 + PGA1_262p00840 0.56 -0.8 93,929 + PGA1_262p00840 0.56 -0.7 93,982 - PGA1_262p00840 0.60 +1.5
Or see this region's nucleotide sequence