Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03760 and PGA1_c03770 are separated by 84 nucleotides PGA1_c03770 and PGA1_c03780 are separated by 150 nucleotides
PGA1_c03760: PGA1_c03760 - succinate dehydrogenase flavoprotein subunit, at 360,165 to 361,970
_c03760
PGA1_c03770: PGA1_c03770 - hypothetical protein, at 362,055 to 362,969
_c03770
PGA1_c03780: PGA1_c03780 - succinate dehydrogenase iron-sulfur subunit, at 363,120 to 363,899
_c03780
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1 at 361.972 kb on + strand at 362.040 kb on + strand at 362.042 kb on + strand at 362.042 kb on + strand at 362.494 kb on + strand, within PGA1_c03770 at 362.516 kb on + strand, within PGA1_c03770 at 362.516 kb on + strand, within PGA1_c03770 at 362.630 kb on + strand, within PGA1_c03770 at 362.735 kb on + strand, within PGA1_c03770 at 362.737 kb on - strand, within PGA1_c03770 at 362.754 kb on + strand, within PGA1_c03770 at 362.766 kb on + strand, within PGA1_c03770 at 362.766 kb on + strand, within PGA1_c03770 at 362.852 kb on - strand, within PGA1_c03770 at 362.884 kb on - strand at 362.899 kb on + strand at 362.963 kb on + strand at 362.963 kb on + strand at 362.963 kb on + strand at 362.971 kb on - strand at 362.971 kb on - strand at 362.982 kb on - strand at 362.982 kb on - strand at 363.067 kb on + strand at 363.906 kb on - strand at 363.928 kb on - strand at 363.933 kb on + strand at 363.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 361,972 + -1.3 362,040 + -0.6 362,042 + -2.2 362,042 + +1.0 362,494 + PGA1_c03770 0.48 +0.2 362,516 + PGA1_c03770 0.50 -1.3 362,516 + PGA1_c03770 0.50 +0.6 362,630 + PGA1_c03770 0.63 -1.9 362,735 + PGA1_c03770 0.74 +0.7 362,737 - PGA1_c03770 0.75 -0.7 362,754 + PGA1_c03770 0.76 -0.3 362,766 + PGA1_c03770 0.78 -0.2 362,766 + PGA1_c03770 0.78 -0.7 362,852 - PGA1_c03770 0.87 -0.1 362,884 - -2.2 362,899 + +1.0 362,963 + -0.4 362,963 + -0.3 362,963 + -1.3 362,971 - -0.1 362,971 - -0.8 362,982 - -0.0 362,982 - +0.3 363,067 + -0.0 363,906 - -0.7 363,928 - -0.3 363,933 + +0.9 363,933 + +0.0
Or see this region's nucleotide sequence