Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00350 and PGA1_262p00360 are separated by 176 nucleotides PGA1_262p00360 and PGA1_262p00370 are separated by 812 nucleotides
PGA1_262p00350: PGA1_262p00350 - metallopeptidase, family M24, at 38,872 to 40,674
_262p00350
PGA1_262p00360: PGA1_262p00360 - methyl-accepting chemotaxis protein, at 40,851 to 43,001
_262p00360
PGA1_262p00370: PGA1_262p00370 - putative polysaccharide synthase, at 43,814 to 45,307
_262p00370
Position (kb) 40
41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.866 kb on - strand, within PGA1_262p00350 at 39.897 kb on - strand, within PGA1_262p00350 at 40.043 kb on - strand, within PGA1_262p00350 at 40.095 kb on - strand, within PGA1_262p00350 at 40.235 kb on + strand, within PGA1_262p00350 at 40.339 kb on + strand, within PGA1_262p00350 at 40.379 kb on - strand, within PGA1_262p00350 at 40.397 kb on + strand, within PGA1_262p00350 at 40.439 kb on - strand, within PGA1_262p00350 at 40.522 kb on + strand at 40.547 kb on + strand at 40.701 kb on + strand at 40.701 kb on + strand at 40.701 kb on + strand at 40.701 kb on + strand at 40.747 kb on + strand at 40.747 kb on + strand at 40.747 kb on + strand at 40.755 kb on - strand at 40.755 kb on - strand at 40.783 kb on + strand at 40.808 kb on - strand at 40.862 kb on + strand at 41.010 kb on - strand at 41.084 kb on - strand, within PGA1_262p00360 at 41.139 kb on + strand, within PGA1_262p00360 at 41.218 kb on + strand, within PGA1_262p00360 at 41.226 kb on - strand, within PGA1_262p00360 at 41.438 kb on + strand, within PGA1_262p00360 at 41.624 kb on + strand, within PGA1_262p00360 at 41.624 kb on + strand, within PGA1_262p00360 at 41.776 kb on + strand, within PGA1_262p00360 at 41.784 kb on - strand, within PGA1_262p00360 at 41.805 kb on - strand, within PGA1_262p00360 at 41.812 kb on + strand, within PGA1_262p00360 at 41.819 kb on - strand, within PGA1_262p00360 at 41.891 kb on + strand, within PGA1_262p00360 at 41.977 kb on - strand, within PGA1_262p00360 at 42.061 kb on + strand, within PGA1_262p00360 at 42.069 kb on - strand, within PGA1_262p00360 at 42.077 kb on - strand, within PGA1_262p00360 at 42.330 kb on - strand, within PGA1_262p00360 at 42.460 kb on + strand, within PGA1_262p00360 at 42.690 kb on - strand, within PGA1_262p00360 at 42.788 kb on + strand at 42.788 kb on + strand at 42.796 kb on - strand at 42.796 kb on - strand at 42.796 kb on - strand at 42.848 kb on - strand at 43.043 kb on + strand at 43.065 kb on + strand at 43.069 kb on + strand at 43.105 kb on + strand at 43.113 kb on - strand at 43.113 kb on - strand at 43.122 kb on + strand at 43.235 kb on - strand at 43.345 kb on + strand at 43.374 kb on + strand at 43.382 kb on - strand at 43.456 kb on + strand at 43.475 kb on + strand at 43.595 kb on - strand at 43.747 kb on + strand at 43.815 kb on - strand at 43.968 kb on - strand, within PGA1_262p00370
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 39,866 - PGA1_262p00350 0.55 -0.9 39,897 - PGA1_262p00350 0.57 -0.6 40,043 - PGA1_262p00350 0.65 +0.6 40,095 - PGA1_262p00350 0.68 +0.1 40,235 + PGA1_262p00350 0.76 +0.6 40,339 + PGA1_262p00350 0.81 +1.1 40,379 - PGA1_262p00350 0.84 +0.8 40,397 + PGA1_262p00350 0.85 +0.4 40,439 - PGA1_262p00350 0.87 +1.1 40,522 + -0.2 40,547 + +0.1 40,701 + +0.2 40,701 + +0.1 40,701 + +0.5 40,701 + -2.1 40,747 + -0.2 40,747 + +1.0 40,747 + +0.8 40,755 - +0.1 40,755 - -1.6 40,783 + -0.7 40,808 - +1.0 40,862 + -0.5 41,010 - -0.3 41,084 - PGA1_262p00360 0.11 -0.3 41,139 + PGA1_262p00360 0.13 -0.4 41,218 + PGA1_262p00360 0.17 +0.2 41,226 - PGA1_262p00360 0.17 +0.1 41,438 + PGA1_262p00360 0.27 -0.2 41,624 + PGA1_262p00360 0.36 +1.0 41,624 + PGA1_262p00360 0.36 -0.2 41,776 + PGA1_262p00360 0.43 +0.2 41,784 - PGA1_262p00360 0.43 -0.3 41,805 - PGA1_262p00360 0.44 -1.9 41,812 + PGA1_262p00360 0.45 -0.2 41,819 - PGA1_262p00360 0.45 -0.8 41,891 + PGA1_262p00360 0.48 -1.5 41,977 - PGA1_262p00360 0.52 -0.3 42,061 + PGA1_262p00360 0.56 -0.2 42,069 - PGA1_262p00360 0.57 -0.9 42,077 - PGA1_262p00360 0.57 -0.9 42,330 - PGA1_262p00360 0.69 -2.9 42,460 + PGA1_262p00360 0.75 -0.3 42,690 - PGA1_262p00360 0.85 +0.2 42,788 + +0.2 42,788 + -0.5 42,796 - -1.1 42,796 - +0.4 42,796 - +0.1 42,848 - +0.5 43,043 + -1.7 43,065 + -0.6 43,069 + -0.0 43,105 + +1.3 43,113 - +0.3 43,113 - +0.9 43,122 + +0.1 43,235 - -0.1 43,345 + +0.8 43,374 + +0.7 43,382 - +0.1 43,456 + +0.7 43,475 + -0.3 43,595 - +0.7 43,747 + +1.0 43,815 - -0.2 43,968 - PGA1_262p00370 0.10 +0.8
Or see this region's nucleotide sequence