Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21820

Experiment: m.b. acetate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21810 and PGA1_c21820 are separated by 116 nucleotidesPGA1_c21820 and PGA1_c21830 are separated by 60 nucleotides PGA1_c21810: PGA1_c21810 - metallophosphoesterase, MG_246/BB_0505 family, at 2,262,928 to 2,263,740 _c21810 PGA1_c21820: PGA1_c21820 - 5-formyltetrahydrofolate cycloligase-like protein, at 2,263,857 to 2,264,420 _c21820 PGA1_c21830: PGA1_c21830 - magnesium transporter MgtE, at 2,264,481 to 2,265,869 _c21830 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -2 -1 0 1 2at 2262.858 kb on + strandat 2262.858 kb on + strandat 2262.863 kb on + strandat 2262.863 kb on + strandat 2262.863 kb on + strandat 2262.866 kb on - strandat 2262.871 kb on - strandat 2262.871 kb on - strandat 2262.917 kb on - strandat 2262.926 kb on + strandat 2262.941 kb on - strandat 2263.200 kb on + strand, within PGA1_c21810at 2263.798 kb on - strandat 2263.851 kb on - strandat 2263.851 kb on - strandat 2263.856 kb on - strandat 2263.869 kb on - strandat 2263.869 kb on - strandat 2263.874 kb on + strandat 2263.899 kb on + strandat 2263.997 kb on + strand, within PGA1_c21820at 2264.005 kb on - strand, within PGA1_c21820at 2264.059 kb on - strand, within PGA1_c21820at 2264.073 kb on + strand, within PGA1_c21820at 2264.190 kb on - strand, within PGA1_c21820at 2264.190 kb on - strand, within PGA1_c21820at 2264.268 kb on - strand, within PGA1_c21820at 2264.359 kb on + strand, within PGA1_c21820at 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.395 kb on + strandat 2264.403 kb on - strandat 2264.403 kb on - strandat 2264.403 kb on - strandat 2264.403 kb on - strandat 2264.405 kb on + strandat 2264.413 kb on - strandat 2264.413 kb on - strandat 2264.413 kb on - strandat 2264.431 kb on + strandat 2264.435 kb on - strandat 2264.435 kb on - strandat 2264.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 100 mM
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2,262,858 + +0.2
2,262,858 + -2.2
2,262,863 + +0.1
2,262,863 + +0.9
2,262,863 + -1.0
2,262,866 - +0.6
2,262,871 - +0.3
2,262,871 - -0.8
2,262,917 - +0.1
2,262,926 + -0.6
2,262,941 - -0.2
2,263,200 + PGA1_c21810 0.33 +0.2
2,263,798 - -0.7
2,263,851 - +0.7
2,263,851 - -1.3
2,263,856 - +1.8
2,263,869 - -1.1
2,263,869 - +0.1
2,263,874 + +1.3
2,263,899 + -0.1
2,263,997 + PGA1_c21820 0.25 +0.8
2,264,005 - PGA1_c21820 0.26 +1.5
2,264,059 - PGA1_c21820 0.36 -0.7
2,264,073 + PGA1_c21820 0.38 -0.2
2,264,190 - PGA1_c21820 0.59 +0.5
2,264,190 - PGA1_c21820 0.59 -0.8
2,264,268 - PGA1_c21820 0.73 -0.6
2,264,359 + PGA1_c21820 0.89 +1.2
2,264,395 + +0.8
2,264,395 + -0.7
2,264,395 + +0.5
2,264,395 + +0.9
2,264,395 + -0.1
2,264,395 + +0.1
2,264,395 + -0.2
2,264,395 + -0.2
2,264,395 + -1.1
2,264,395 + -0.6
2,264,395 + +0.6
2,264,403 - -0.7
2,264,403 - -0.1
2,264,403 - +0.8
2,264,403 - -0.4
2,264,405 + -1.2
2,264,413 - -0.5
2,264,413 - +0.8
2,264,413 - +0.8
2,264,431 + -1.4
2,264,435 - -0.3
2,264,435 - +0.3
2,264,482 - +0.0

Or see this region's nucleotide sequence